fix formatting

marcellszi · Mar 11, 2024 · 91fba69 · 91fba69
1 parent f623b93
commit 91fba69
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Showing 2 changed files with 5 additions and 4 deletions.
diff --git a/scripts/generate_modifications_cache.py b/scripts/generate_modifications_cache.py
@@ -8,7 +8,7 @@
 
 from Bio.Data import SCOPData
 
-VALID_RNA_CODES = set('ACGUT')
+VALID_RNA_CODES = set("ACGUT")
 
 # a few values are adjusted manually to make sure we are as correct as possible
 # and to avoid inconsistency with AlphaFold
@@ -106,7 +106,7 @@ def main(args):
 
     for k, v in modifications.items():
         if comp_types[k] == "protein":
-                data["protein"][k] = v
+            data["protein"][k] = v
         if comp_types[k] == "rna":
             if v in VALID_RNA_CODES:
                 data["rna"][k] = v

diff --git a/tests/test_modifications.py b/tests/test_modifications.py
@@ -8,7 +8,9 @@
 
 
 class TestModifications(unittest.TestCase):
-    modification_handler = ModificationHandler("tests/test_data/modifications_cache.json")
+    modification_handler = ModificationHandler(
+        "tests/test_data/modifications_cache.json"
+    )
 
     # accept both A and U for selenocysteines
     # note that selenocysteines that are incorrectly encoded in SCOPData
@@ -64,4 +66,3 @@ def test_biopython_coverage(self):
 
 if __name__ == "__main__":
     unittest.main()
-