references.bib

@article{rouillard2016,
	title = {The harmonizome: a collection of processed datasets gathered to serve and mine knowledge about genes and proteins},
	author = {Rouillard, Andrew D. and Gundersen, Gregory W. and Fernandez, Nicolas F. and Wang, Zichen and Monteiro, Caroline D. and McDermott, Michael G. and {Ma{\textquoteright}ayan}, Avi},
	year = {2016},
	date = {2016},
	journal = {Database},
	pages = {baw100},
	volume = {2016},
	doi = {10.1093/database/baw100},
	url = {http://dx.doi.org/10.1093/database/baw100},
	langid = {en}
}

@article{fgsea,
	title = {Fast gene set enrichment analysis},
	author = {Korotkevich, Gennady and Sukhov, Vladimir and Sergushichev, Alexey},
	year = {2019},
	date = {2019},
	doi = {10.1101/060012},
	url = {http://biorxiv.org/content/early/2016/06/20/060012}
}

@article{clusterProfiler,
	title = {clusterProfiler 4.0: A universal enrichment tool for interpreting omics data},
	author = {Wu, Tianzhi and Hu, Erqiang and Xu, Shuangbin and Chen, Meijun and Guo, Pingfan and Dai, Zehan and Feng, Tingze and Zhou, Lang and Tang, Wenli and Zhan, Li and Fu, xiaochong and Liu, Shanshan and Bo, Xiaochen and Yu, Guangchuang},
	year = {2021},
	date = {2021},
	pages = {100141},
	volume = {2},
	doi = {10.1016/j.xinn.2021.100141}
}

@article{GSVA,
	title = {{\textbraceleft}GSVA{\textbraceright}: gene set variation analysis for microarray and {\textbraceleft}RNA-Seq{\textbraceright} data},
	author = {Hanzelmann, Sonja and Castelo, Robert and Guinney, Justin},
	year = {2013},
	date = {2013},
	pages = {7},
	volume = {14},
	doi = {10.1186/1471-2105-14-7},
	url = {http://www.biomedcentral.com/1471-2105/14/7}
}

@article{Hänzelmann2013,
	title = {GSVA: gene set variation analysis for microarray and RNA-Seq data},
	author = {{Hänzelmann}, Sonja and Castelo, Robert and Guinney, Justin},
	year = {2013},
	month = {01},
	date = {2013-01-16},
	journal = {BMC Bioinformatics},
	volume = {14},
	number = {1},
	doi = {10.1186/1471-2105-14-7},
	url = {http://dx.doi.org/10.1186/1471-2105-14-7},
	langid = {en}
}

@article{subramanian2005,
	title = {Gene set enrichment analysis: A knowledge-based approach for interpreting genome-wide expression profiles},
	author = {Subramanian, Aravind and Tamayo, Pablo and Mootha, Vamsi K. and Mukherjee, Sayan and Ebert, Benjamin L. and Gillette, Michael A. and Paulovich, Amanda and Pomeroy, Scott L. and Golub, Todd R. and Lander, Eric S. and Mesirov, Jill P.},
	year = {2005},
	month = {09},
	date = {2005-09-30},
	journal = {Proceedings of the National Academy of Sciences},
	pages = {15545--15550},
	volume = {102},
	number = {43},
	doi = {10.1073/pnas.0506580102},
	url = {http://dx.doi.org/10.1073/pnas.0506580102},
	langid = {en}
}

@article{mootha2003,
	title = {PGC-1α-responsive genes involved in oxidative phosphorylation are coordinately downregulated in human diabetes},
	author = {Mootha, Vamsi K and Lindgren, Cecilia M and Eriksson, Karl-Fredrik and Subramanian, Aravind and Sihag, Smita and Lehar, Joseph and Puigserver, Pere and Carlsson, Emma and {Ridderstråle}, Martin and Laurila, Esa and Houstis, Nicholas and Daly, Mark J and Patterson, Nick and Mesirov, Jill P and Golub, Todd R and Tamayo, Pablo and Spiegelman, Bruce and Lander, Eric S and Hirschhorn, Joel N and Altshuler, David and Groop, Leif C},
	year = {2003},
	month = {06},
	date = {2003-06-15},
	journal = {Nature Genetics},
	pages = {267--273},
	volume = {34},
	number = {3},
	doi = {10.1038/ng1180},
	url = {http://dx.doi.org/10.1038/ng1180},
	langid = {en}
}