python-app.yml

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://docs.github.com/en/actions/automating-builds-and-tests/building-and-testing-python

name: Hest tests

on:
  #push:
  #  branches: [ "main", "develop"]
  pull_request:
    branches: [ "main" ]

permissions:
  contents: read

jobs:
  build:

    runs-on: ubuntu-latest
    env:
      HF_READ_TOKEN_PAUL: ${{ secrets.HF_READ_TOKEN_PAUL }}

    steps:
    - uses: actions/checkout@v4
    - name: Set up Python 3.9
      uses: actions/setup-python@v3
      with:
        python-version: "3.9"
     
    - name: Install python dependencies
      run: |
        python -m pip install -e .
    - name: Install apt dependencies
      run: |
        sudo apt-get update
        sudo apt-get install libvips libvips-dev openslide-tools

    - name: Run tests
      run: |
        python tests/hest_tests.py