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@mahmoodlab

Mahmood Lab @ Harvard/MGB

AI for Pathology Image Analysis Lab @ HMS / BWH

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  1. CLAM CLAM Public

    Open source tools for computational pathology - Nature BME

    Python 1.2k 394

  2. TRIDENT TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    Python 88 6

  3. UNI UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    Jupyter Notebook 395 58

  4. CONCH CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    Python 315 25

  5. TITAN TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    Jupyter Notebook 165 19

  6. HEST HEST Public

    HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)

    Python 224 19

Repositories

Showing 10 of 32 repositories
  • TRIDENT Public

    Toolkit for large-scale whole-slide image processing.

    mahmoodlab/TRIDENT’s past year of commit activity
    Python 88 6 5 1 Updated Feb 21, 2025
  • MMP Public

    Multimodal prototyping for cancer survival prediction - ICML 2024

    mahmoodlab/MMP’s past year of commit activity
    Jupyter Notebook 70 7 1 0 Updated Feb 20, 2025
  • Patho-Bench Public

    Standardized benchmark for computational pathology foundation models.

    mahmoodlab/Patho-Bench’s past year of commit activity
    Python 38 3 2 0 Updated Feb 19, 2025
  • PANTHER Public

    Morphological Prototyping for Unsupervised Slide Representation Learning in Computational Pathology - CVPR 2024

    mahmoodlab/PANTHER’s past year of commit activity
    Jupyter Notebook 115 12 0 0 Updated Feb 19, 2025
  • MADELEINE Public

    MADELEINE: multi-stain slide representation learning (ECCV'24)

    mahmoodlab/MADELEINE’s past year of commit activity
    Python 43 4 2 1 Updated Feb 19, 2025
  • TITAN Public

    Multimodal Whole Slide Foundation Model for Pathology

    mahmoodlab/TITAN’s past year of commit activity
    Jupyter Notebook 165 19 0 1 Updated Feb 15, 2025
  • HEST Public

    HEST: Bringing Spatial Transcriptomics and Histopathology together - NeurIPS 2024 (Spotlight)

    mahmoodlab/HEST’s past year of commit activity
    Python 224 19 10 0 Updated Feb 8, 2025
  • TriPath Public

    Analysis of 3D pathology samples using weakly supervised AI - Cell

    mahmoodlab/TriPath’s past year of commit activity
    Python 97 8 0 0 Updated Jan 25, 2025
  • CONCH Public

    A vision-language foundation model for computational pathology - Nature Medicine

    mahmoodlab/CONCH’s past year of commit activity
    Python 315 24 5 1 Updated Jan 16, 2025
  • UNI Public

    Towards a general-purpose foundation model for computational pathology - Nature Medicine

    mahmoodlab/UNI’s past year of commit activity
    Jupyter Notebook 395 58 17 2 Updated Jan 15, 2025
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