diff --git a/assets/magium-configuration.xsd b/assets/magium-configuration.xsd
index f9ad5e0..7d2121b 100644
--- a/assets/magium-configuration.xsd
+++ b/assets/magium-configuration.xsd
@@ -85,7 +85,16 @@
                 <xs:element name="configurationFiles" minOccurs="0" maxOccurs="1">
                     <xs:complexType>
                         <xs:sequence>
-                            <xs:element name="file" minOccurs="1" maxOccurs="unbounded" />
+                            <xs:element name="file" minOccurs="1" maxOccurs="unbounded">
+                            <xs:annotation>
+                                <xs:documentation>
+                                    This is the fully qualified or configurationDirectories-related path for a
+                                    specific configuration file.  If you are building a module that will be included
+                                    via something like Composer do not use this.  Get the ConfigurationRepository
+                                    object from the Builder and add them there.
+                                </xs:documentation>
+                            </xs:annotation>
+                            </xs:element>
                         </xs:sequence>
                     </xs:complexType>
                 </xs:element>
diff --git a/lib/Config/BuilderFactory.php b/lib/Config/BuilderFactory.php
index b92ae07..69499a7 100644
--- a/lib/Config/BuilderFactory.php
+++ b/lib/Config/BuilderFactory.php
@@ -55,7 +55,8 @@ public function getPersistence()
     public function getSecureBaseDirectories()
     {
         $cwd = getcwd();
-        chdir($this->baseDirectory->getPath());
+        $path = $this->baseDirectory->getRealPath();
+        chdir($path);
         $config = $this->configuration->configurationDirectories;
         $config = json_encode($config);
         $config = json_decode($config, true);
diff --git a/tests/Config/BuilderFactoryTest.php b/tests/Config/BuilderFactoryTest.php
index 0edaf7f..e885a17 100644
--- a/tests/Config/BuilderFactoryTest.php
+++ b/tests/Config/BuilderFactoryTest.php
@@ -131,7 +131,7 @@ protected function runConfigurationFiles(\SimpleXMLElement $config, array $secur
     protected function getFactory(\SimpleXMLElement $config)
     {
         $factory = new BuilderFactory(
-            new \SplFileInfo(__DIR__ . '../../'),
+            new \SplFileInfo(__DIR__),
             $config,
             $this->createMock(AbstractContextConfigurationFile::class)
         );