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461 Open 838 Closed
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Issues list

[at some stage in the future] use or support snake case for field technical names
#3642 opened Feb 7, 2025 by theosanderson
Agree naming for earliestReleaseDate, rename in Loculus, then include in Pathoplexus discussion Open questions high_priority Work on this as soon as possible (potentially post-MVP)
#3641 opened Feb 7, 2025 by theosanderson
1
Make more information about metadata fields available on Revise/Edit pages documentation Improvements or additions to documentation website Tasks related to the web application
#3639 opened Feb 7, 2025 by emmahodcroft
Loculus specific SMTP and ORCiD settings are in the Helm Chart by default
#3637 opened Feb 6, 2025 by fhennig
1
Set up caching proxy for NCBI Datasets
#3633 opened Feb 6, 2025 by theosanderson
Wrong interaction between data use terms search filter and data use terms download settings bug Something isn't working
#3631 opened Feb 5, 2025 by corneliusroemer
4
Add regression test that would catch the issue fixed in #3628
#3630 opened Feb 5, 2025 by corneliusroemer
Test ENA submission
#3620 opened Feb 4, 2025 by theosanderson
Keycloak previews no longer allow login with admin:admin auth authentication, authorization, incl. keycloak and keycloakify related issues
#3618 opened Feb 4, 2025 by corneliusroemer
1
1
Metadata format should load with the right organism selected
#3612 opened Feb 3, 2025 by theosanderson
lineage system definitions should be configured as part of the preprocessing pipeline configuration
#3603 opened Feb 3, 2025 by theosanderson
13
Surface reference sequence ID for mutations, etc. more prominently website Tasks related to the web application
#3599 opened Feb 3, 2025 by theosanderson
@theosanderson
1
feat: Explain our QC, clades and alignment better high_priority Work on this as soon as possible (potentially post-MVP)
#3592 opened Jan 31, 2025 by anna-parker
3 tasks
5
Add a way to ignore specific sequences in the ingest script good_first_issue ingest Ingest pipeline
#3589 opened Jan 30, 2025 by anna-parker
Switch default download to sequences, not metadata website Tasks related to the web application
#3587 opened Jan 28, 2025 by corneliusroemer
4
Document customDisplay config documentation Improvements or additions to documentation
#3574 opened Jan 26, 2025 by chaoran-chen
Document available types documentation Improvements or additions to documentation
#3573 opened Jan 26, 2025 by chaoran-chen
Browse page split view: cannot scroll fully down bug Something isn't working website Tasks related to the web application
#3572 opened Jan 23, 2025 by chaoran-chen
Refactor findNewPreprocessingPipelineVersion SQL query backend related to the loculus backend component codesmell For warnings/lints without immediate harm but to be fixed eventually refactoring Code requires refactoring
#3571 opened Jan 23, 2025 by fhennig
Improve alignment of group icon on (e.g.) review page website Tasks related to the web application
#3569 opened Jan 22, 2025 by theosanderson
Investigate support of full IUPAC ambiguous nucleotide support + followup actions
#3563 opened Jan 21, 2025 by corneliusroemer
4 tasks
3
Document which files support compression and which don't bug Something isn't working documentation Improvements or additions to documentation website Tasks related to the web application
#3562 opened Jan 21, 2025 by corneliusroemer
2 tasks
1
@fhennig
6
Edit Github PR template to have basic checklist on: a) PR title, b) indicating breaking changes, ...
#3561 opened Jan 21, 2025 by corneliusroemer
2 tasks
@corneliusroemer
RfC: Whether to allow gap characters in consensus submissions or not, and if so, how to handle them (strip or keep)
#3560 opened Jan 21, 2025 by corneliusroemer
3
Don't use color as the only way that information is communicated: mention Error/Warning in text accessibility good_first_issue website Tasks related to the web application
#3559 opened Jan 21, 2025 by corneliusroemer
2
ProTip! Exclude everything labeled bug with -label:bug.