Skip to content

Commit

Permalink
Merge pull request #3 from ljacquin/perf/optimize-krmm-computation
Browse files Browse the repository at this point in the history
docs: update readme
  • Loading branch information
ljacquin authored Apr 14, 2024
2 parents c0b1301 + 893a831 commit 5471c3c
Showing 1 changed file with 3 additions and 3 deletions.
6 changes: 3 additions & 3 deletions README.md
Original file line number Diff line number Diff line change
Expand Up @@ -4,11 +4,11 @@

The KRMM package provides advanced tools for solving kernel ridge regression within the following mixed model framework:

\[
$$
Y = X\beta + Zu + \varepsilon
\]
$$

where \( X \) and \( Z \) are design matrices of predictors with fixed and random effects, respectively. The random effect \( u \) follows a normal distribution \( N_n(0, K_{\sigma^2_{K}}) \), where \( K \) is the genomic covariance matrix (also known as the Gram matrix) built using different kernels.
where $X$ and $Z$ are design matrices of predictors with fixed and random effects, respectively. The random effect $u$ follows a multivariate normal distribution $N_n(0, K_{\sigma^2_{K}})$, where $K$ is the genomic covariance matrix (also known as the Gram matrix) built using different kernels.

The package offers flexibility in kernel choice, including linear, polynomial, Gaussian, Laplacian, and ANOVA kernels. The RR-BLUP (Random Regression BLUP) or GBLUP (Genomic BLUP) ```method``` is associated with the linear kernel, while the RKHS (Reproducing Kernel Hilbert Space) ```method``` is associated with the other kernels, with the Gaussian kernel set as the default.

Expand Down

0 comments on commit 5471c3c

Please sign in to comment.