update dependencies and LinkML version

Signed-off-by: Vincent Kelleher <vincent.kelleher@gaia-x.eu>
linkml · Dec 24, 2024 · d6723c6 · d6723c6
1 parent 33e7281
commit d6723c6
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Showing 21 changed files with 25,364 additions and 10,862 deletions.
diff --git a/linkml_model/annotations.py b/linkml_model/annotations.py
@@ -1,5 +1,5 @@
 # Auto generated from annotations.yaml by pythongen.py version: 0.0.1
-# Generation date: 2024-02-07T17:29:22
+# Generation date: 2024-12-24T09:44:49
 # Schema: annotations
 #
 # id: https://w3id.org/linkml/annotations
@@ -8,18 +8,50 @@
 
 import dataclasses
 import re
-from jsonasobj2 import JsonObj, as_dict
-from typing import Optional, List, Union, Dict, ClassVar, Any
 from dataclasses import dataclass
-
-from linkml_runtime.utils.slot import Slot
-from linkml_runtime.utils.metamodelcore import empty_list, empty_dict, bnode
-from linkml_runtime.utils.yamlutils import YAMLRoot, extended_str, extended_float, extended_int
+from datetime import (
+    date,
+    datetime,
+    time
+)
+from typing import (
+    Any,
+    ClassVar,
+    Dict,
+    List,
+    Optional,
+    Union
+)
+
+from jsonasobj2 import (
+    JsonObj,
+    as_dict
+)
+from linkml_runtime.utils.curienamespace import CurieNamespace
 from linkml_runtime.utils.dataclass_extensions_376 import dataclasses_init_fn_with_kwargs
-from linkml_runtime.utils.formatutils import camelcase, underscore, sfx
 from linkml_runtime.utils.enumerations import EnumDefinitionImpl
-from rdflib import Namespace, URIRef
-from linkml_runtime.utils.curienamespace import CurieNamespace
+from linkml_runtime.utils.formatutils import (
+    camelcase,
+    sfx,
+    underscore
+)
+from linkml_runtime.utils.metamodelcore import (
+    bnode,
+    empty_dict,
+    empty_list
+)
+from linkml_runtime.utils.slot import Slot
+from linkml_runtime.utils.yamlutils import (
+    YAMLRoot,
+    extended_float,
+    extended_int,
+    extended_str
+)
+from rdflib import (
+    Namespace,
+    URIRef
+)
+
 from .extensions import AnyValue, Extension, ExtensionTag
 from .types import Uriorcurie
 from linkml_runtime.utils.metamodelcore import URIorCURIE
@@ -42,7 +74,7 @@ class AnnotationTag(ExtensionTag):
     pass
 
 
-@dataclass
+@dataclass(repr=False)
 class Annotatable(YAMLRoot):
     """
     mixin for classes that support annotations
@@ -62,7 +94,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
         super().__post_init__(**kwargs)
 
 
-@dataclass
+@dataclass(repr=False)
 class Annotation(Extension):
     """
     a tag/value pair with the semantics of OWL Annotation

diff --git a/linkml_model/datasets.py b/linkml_model/datasets.py
@@ -1,5 +1,5 @@
 # Auto generated from datasets.yaml by pythongen.py version: 0.0.1
-# Generation date: 2024-02-07T17:29:27
+# Generation date: 2024-12-24T09:44:50
 # Schema: datasets
 #
 # id: https://w3id.org/linkml/datasets
@@ -8,18 +8,50 @@
 
 import dataclasses
 import re
-from jsonasobj2 import JsonObj, as_dict
-from typing import Optional, List, Union, Dict, ClassVar, Any
 from dataclasses import dataclass
-
-from linkml_runtime.utils.slot import Slot
-from linkml_runtime.utils.metamodelcore import empty_list, empty_dict, bnode
-from linkml_runtime.utils.yamlutils import YAMLRoot, extended_str, extended_float, extended_int
+from datetime import (
+    date,
+    datetime,
+    time
+)
+from typing import (
+    Any,
+    ClassVar,
+    Dict,
+    List,
+    Optional,
+    Union
+)
+
+from jsonasobj2 import (
+    JsonObj,
+    as_dict
+)
+from linkml_runtime.utils.curienamespace import CurieNamespace
 from linkml_runtime.utils.dataclass_extensions_376 import dataclasses_init_fn_with_kwargs
-from linkml_runtime.utils.formatutils import camelcase, underscore, sfx
 from linkml_runtime.utils.enumerations import EnumDefinitionImpl
-from rdflib import Namespace, URIRef
-from linkml_runtime.utils.curienamespace import CurieNamespace
+from linkml_runtime.utils.formatutils import (
+    camelcase,
+    sfx,
+    underscore
+)
+from linkml_runtime.utils.metamodelcore import (
+    bnode,
+    empty_dict,
+    empty_list
+)
+from linkml_runtime.utils.slot import Slot
+from linkml_runtime.utils.yamlutils import (
+    YAMLRoot,
+    extended_float,
+    extended_int,
+    extended_str
+)
+from rdflib import (
+    Namespace,
+    URIRef
+)
+
 from .types import Datetime, Integer, String, Uri, Uriorcurie
 from linkml_runtime.utils.metamodelcore import URI, URIorCURIE, XSDDateTime
 
@@ -68,7 +100,7 @@ class DataResourceId(InformationId):
     pass
 
 
-@dataclass
+@dataclass(repr=False)
 class Information(YAMLRoot):
     """
     Grouping for datasets and data files
@@ -165,7 +197,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
         super().__post_init__(**kwargs)
 
 
-@dataclass
+@dataclass(repr=False)
 class DataPackage(Information):
     """
     A collection of data resources
@@ -193,7 +225,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
         super().__post_init__(**kwargs)
 
 
-@dataclass
+@dataclass(repr=False)
 class DataResource(Information):
     """
     An individual file or table
@@ -260,7 +292,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
         super().__post_init__(**kwargs)
 
 
-@dataclass
+@dataclass(repr=False)
 class FormatDialect(YAMLRoot):
     """
     Additional format information for a file

diff --git a/linkml_model/excel/meta.xlsx b/linkml_model/excel/meta.xlsx
diff --git a/linkml_model/extensions.py b/linkml_model/extensions.py
@@ -1,5 +1,5 @@
 # Auto generated from extensions.yaml by pythongen.py version: 0.0.1
-# Generation date: 2024-02-07T17:29:29
+# Generation date: 2024-12-24T09:44:52
 # Schema: extensions
 #
 # id: https://w3id.org/linkml/extensions
@@ -8,18 +8,50 @@
 
 import dataclasses
 import re
-from jsonasobj2 import JsonObj, as_dict
-from typing import Optional, List, Union, Dict, ClassVar, Any
 from dataclasses import dataclass
-
-from linkml_runtime.utils.slot import Slot
-from linkml_runtime.utils.metamodelcore import empty_list, empty_dict, bnode
-from linkml_runtime.utils.yamlutils import YAMLRoot, extended_str, extended_float, extended_int
+from datetime import (
+    date,
+    datetime,
+    time
+)
+from typing import (
+    Any,
+    ClassVar,
+    Dict,
+    List,
+    Optional,
+    Union
+)
+
+from jsonasobj2 import (
+    JsonObj,
+    as_dict
+)
+from linkml_runtime.utils.curienamespace import CurieNamespace
 from linkml_runtime.utils.dataclass_extensions_376 import dataclasses_init_fn_with_kwargs
-from linkml_runtime.utils.formatutils import camelcase, underscore, sfx
 from linkml_runtime.utils.enumerations import EnumDefinitionImpl
-from rdflib import Namespace, URIRef
-from linkml_runtime.utils.curienamespace import CurieNamespace
+from linkml_runtime.utils.formatutils import (
+    camelcase,
+    sfx,
+    underscore
+)
+from linkml_runtime.utils.metamodelcore import (
+    bnode,
+    empty_dict,
+    empty_list
+)
+from linkml_runtime.utils.slot import Slot
+from linkml_runtime.utils.yamlutils import (
+    YAMLRoot,
+    extended_float,
+    extended_int,
+    extended_str
+)
+from rdflib import (
+    Namespace,
+    URIRef
+)
+
 from .types import Uriorcurie
 from linkml_runtime.utils.metamodelcore import URIorCURIE
 
@@ -43,7 +75,7 @@ class ExtensionTag(URIorCURIE):
 
 AnyValue = Any
 
-@dataclass
+@dataclass(repr=False)
 class Extension(YAMLRoot):
     """
     a tag/value pair used to add non-model information to an entry
@@ -70,7 +102,7 @@ def __post_init__(self, *_: List[str], **kwargs: Dict[str, Any]):
         super().__post_init__(**kwargs)
 
 
-@dataclass
+@dataclass(repr=False)
 class Extensible(YAMLRoot):
     """
     mixin for classes that support extension