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lilab-bcb

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  1. cumulus cumulus Public

    Cloud-based scalable and efficient single-cell genomics workflows

    WDL 62 31

  2. pegasus pegasus Public

    A tool for analyzing trascriptomes of millions of single cells.

    Python 86 23

  3. pegasusio pegasusio Public

    pegasus io module for reading/writing single-cell genomics data

    Python 7 4

  4. demuxEM demuxEM Public

    Demultiplexing cell/nucleus hashing data for single-cell genomics

    Python 2 3

  5. harmony-pytorch harmony-pytorch Public

    Python 53 9

  6. nmf-torch nmf-torch Public

    Python 11 3

Repositories

Showing 10 of 38 repositories
  • cumulus Public

    Cloud-based scalable and efficient single-cell genomics workflows

    lilab-bcb/cumulus’s past year of commit activity
    WDL 62 BSD-3-Clause 31 10 0 Updated May 16, 2025
  • pegasusio Public

    pegasus io module for reading/writing single-cell genomics data

    lilab-bcb/pegasusio’s past year of commit activity
    Python 7 BSD-3-Clause 4 1 1 Updated May 14, 2025
  • pegasus Public

    A tool for analyzing trascriptomes of millions of single cells.

    lilab-bcb/pegasus’s past year of commit activity
    Python 86 BSD-3-Clause 23 11 2 Updated May 13, 2025
  • stratocumulus Public

    Backend component of Cumulus for different cloud environments.

    lilab-bcb/stratocumulus’s past year of commit activity
    Python 2 BSD-3-Clause 0 1 1 Updated May 12, 2025
  • backedarray Public

    Sparse csc and csr arrays backed by on-disk storage in Zarr or HDF5

    lilab-bcb/backedarray’s past year of commit activity
    Jupyter Notebook 7 BSD-3-Clause 0 0 1 Updated May 12, 2025
  • altocumulus Public

    Command line tool for submitting WDL jobs to Terra or Cromwell server.

    lilab-bcb/altocumulus’s past year of commit activity
    Python 7 BSD-3-Clause 0 3 1 Updated May 12, 2025
  • cirrocumulus Public

    Bring your single-cell data to life

    lilab-bcb/cirrocumulus’s past year of commit activity
    JavaScript 81 BSD-3-Clause 17 12 2 Updated May 12, 2025
  • cumulus_feature_barcoding Public
    lilab-bcb/cumulus_feature_barcoding’s past year of commit activity
    C++ 2 BSD-3-Clause 1 0 0 Updated May 12, 2025
  • nmf-torch Public
    lilab-bcb/nmf-torch’s past year of commit activity
    Python 11 BSD-3-Clause 3 0 0 Updated Apr 28, 2025
  • UMI-tools Public Forked from CGATOxford/UMI-tools

    Tools for handling Unique Molecular Identifiers in NGS data sets

    lilab-bcb/UMI-tools’s past year of commit activity
    Python 0 MIT 198 0 0 Updated Apr 16, 2025
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