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project.clj
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project.clj
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(defproject datains "0.4.3"
:description "Datains is an web tool for `Reproducible Omics Pipeline `."
:url "http://datains.3steps.cn/"
;; !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
;; !! PLEASE KEEP THESE ORGANIZED ALPHABETICALLY !!
;; !! AND ADD A COMMENT EXPLAINING THEIR PURPOSE !!
;; !!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
:dependencies [[org.clojure/clojure "1.10.1"]
[org.clojure/tools.namespace "1.0.0"]
[org.clojure/tools.cli "0.4.2"
:exclusions [org.clojure/clojure]]
[org.clojure/tools.logging "0.5.0"
:exclusions [org.clojure/clojure]]
[ch.qos.logback/logback-classic "1.2.3"]
[cheshire "5.9.0" :exclusions [org.clojure/clojure]]
[clj-http "3.9.1"] ; HTTP client
[clojure.java-time "0.3.2"]
[clojurewerkz/quartzite "2.1.0"
:exclusions [org.clojure/clojure]] ; scheduling library
[colorize "0.1.1" :exclusions [org.clojure/clojure]] ; string output with ANSI color codes (for logging)
[conman "0.8.4"
:exclusions [org.clojure/java.jdbc
org.clojure/clojure]]
[cprop "0.1.14" :exclusions [org.clojure/clojure]]
[expound "0.7.2"]
[funcool/struct "1.4.0"
:exclusions [org.clojure/clojure
com.google.code.findbugs/jsr305
com.google.errorprone/error_prone_annotations]]
[luminus-jetty "0.1.7"
:exclusions [clj-time joda-time org.clojure/clojure]]
[luminus-migrations "0.6.6" :exclusions [org.clojure/clojure]]
[luminus-transit "0.1.2" :exclusions [org.clojure/clojure]]
[luminus/ring-ttl-session "0.3.3"
:exclusions [org.clojure/clojure]]
[markdown-clj "1.10.0" :exclusions [org.clojure/clojure]]
[metosin/muuntaja "0.6.6"
:exclusions [com.fasterxml.jackson.core/jackson-core
com.fasterxml.jackson.core/jackson-databind
com.fasterxml.jackson.core/jackson-annotations]]
[metosin/reitit "0.3.10"
:exclusions [clj-time
joda-time
org.clojure/clojure
com.fasterxml.jackson.core/jackson-databind
com.fasterxml.jackson.core/jackson-core
com.fasterxml.jackson.core/jackson-annotations]]
[metosin/ring-http-response "0.9.1"
:exclusions [clj-time
joda-time
org.clojure/clojure]]
[mount "0.1.16"]
[nrepl "0.6.0"]
[org.postgresql/postgresql "42.2.8"]
[org.tcrawley/dynapath "1.0.0"] ; Dynamically add Jars (e.g. Oracle or Vertica) to classpath
[org.webjars.npm/bulma "0.8.0"]
[org.webjars.npm/material-icons "0.3.1"]
[org.webjars/webjars-locator "0.38"
:exclusions [org.slf4j/slf4j-api
com.fasterxml.jackson.core/jackson-core]]
[prismatic/schema "1.1.11"] ; Data schema declaration and validation library
[ring-webjars "0.2.0" :exclusions [org.clojure/clojure]]
[ring/ring-core "1.8.0" :exclusions [org.clojure/clojure]]
[ring/ring-defaults "0.3.2" :exclusions [org.clojure/clojure]]
[ring/ring-servlet "1.7.1"
:exclusions [joda-time
clj-time
org.clojure/clojure]]
[selmer "1.12.17" :exclusions [org.clojure/clojure]]
[honeysql "1.0.444"]
[camel-snake-kebab "0.4.1"]
[clj-jgit "1.0.0-beta3"]
[clinico-omics/clj-antlr "0.2.9-SNAPSHOT"]
[ring-cors "0.1.13"]
[ring/ring-headers "0.3.0"]
[me.raynes/fs "1.4.6"]
[danlentz/clj-uuid "0.1.9"]
[clj-time "0.15.2"]
[lambdaisland/uri "1.2.1"] ; https://github.com/dakrone/clj-http#optional-dependencies
[org.clojure/tools.reader "1.3.2"] ; for :as :clojure
[digest "1.4.9"] ; Digest algorithms (md5, sha1 ...) for Clojure
[clj-filesystem "0.2.7"]
[com.novemberain/monger "3.1.0"]
[com.draines/postal "2.0.4"]]
:repositories [["central" "https://maven.aliyun.com/repository/central"]
["jcenter" "https://maven.aliyun.com/repository/jcenter"]
["clojars" "https://mirrors.tuna.tsinghua.edu.cn/clojars/"]
["clojars-official" "https://clojars.org/repo/"]]
:plugin-repositories [["central" "https://maven.aliyun.com/repository/central"]
["jcenter" "https://maven.aliyun.com/repository/jcenter"]
["clojars" "https://mirrors.tuna.tsinghua.edu.cn/clojars/"]]
:min-lein-version "2.0.0"
:source-paths ["src"]
:test-paths ["test"]
:resource-paths ["resources"]
:target-path "target/%s/"
:main ^:skip-aot datains.core
:profiles
{:uberjar {:omit-source false ; You can't set to true, if you want to make the findnamespace valid (for tasks/events).
:aot :all
:uberjar-name "datains.jar"
:source-paths ["env/prod"]
:resource-paths ["env/prod/resources"]}
:dev [:project/dev :profiles/dev]
:test [:project/dev :project/test :profiles/test]
:project/dev {:env {:datains-run-mode "dev"}
:jvm-opts ["-Dconf=dev-config.edn"]
:dependencies [[directory-naming/naming-java "0.8"]
[pjstadig/humane-test-output "0.10.0"]
[prone "2019-07-08"]
[ring/ring-devel "1.8.0" :exclusions [org.clojure/clojure]]
[ring/ring-mock "0.4.0" :exclusions [org.clojure/clojure]]]
:plugins [[com.jakemccrary/lein-test-refresh "0.24.1"]
[jonase/eastwood "0.3.6"]
[cider/cider-nrepl "0.25.3"]
[nubank/lein-jupyter "0.1.18"]]
:jupyter-options {:jupyter-path "jupyter"}
:source-paths ["env/dev"]
:resource-paths ["env/dev/resources"]
:repl {:plugins [[cider/cider-nrepl "0.25.3"]]
:dependencies [[nrepl "0.6.0"]
[cider/piggieback "0.4.0"]
[figwheel-sidecar "0.5.18"]]
:repl-options {:nrepl-middleware [cider.piggieback/wrap-cljs-repl]}}
:injections [(require 'pjstadig.humane-test-output)
(pjstadig.humane-test-output/activate!)]}
:project/test {:env {:datains-run-mode "test"}
:jvm-opts ["-Dconf=test-config.edn"]
:resource-paths ["env/test/resources"]}
:profiles/dev {}
:profiles/test {}})