This repository is for hosting the code for the LIDB n36 project lead by AE Jaffe.
If you have any questions about the files in this directory contact AE Jaffe andrew.jaffe@libd.org.
Scripts use derfinder and are organized in the following way:
- derCoverageInfo: contains scripts for processing data from BAM files, filtering and creating Rdata files.
- fullCoverage: similar as derCoverageInfo but without filtering data.
- derAnalysis: has scripts for creating the models, running the derfinder analysis one chromosome at a time, merging the results, and creating a html report.