DESCRIPTION

Package: smer
Title: Sparse Marginal Epistasis Test
Version: 0.0.1
URL: https://github.com/lcrawlab/sme, https://lcrawlab.github.io/sme/
BugReports: https://github.com/lcrawlab/sme/issues
Authors@R: c(
    person("Julian", "Stamp", email = "julian.d.stamp@gmail.com",
    role = c("cre", "aut"), comment = c(ORCID = "0000-0003-3014-6249")),
    person("Lorin", "Crawford", email = "lcrawford@microsoft.com",
    role = "aut", comment = c(ORCID = "0000-0003-0178-8242")),
    person("sriramlab", role = "cph", comment = "Author of included mailman algorithm"),
    person("Blue Brain Project/EPFL", role = "cph", comment = "Author of included HighFive library"))
Description: The Sparse Marginal Epistasis Test is a computationally efficient 
    genetics method which detects statistical epistasis in complex traits;
    see Stamp et al. (2025, <doi:10.1101/2025.01.11.632557>) for details.
License: MIT + file LICENSE
Encoding: UTF-8
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.2
LinkingTo:
    BH,
    Rcpp,
    RcppEigen,
    Rhdf5lib,
    testthat
Imports:
    dplyr,
    genio,
    logging,
    mvMAPIT,
    Rcpp,
    tidyr
Suggests:
    GenomicRanges,
    ggplot2,
    knitr,
    rmarkdown,
    testthat (>= 3.0.0),
    xml2
Config/testthat/edition: 3
SystemRequirements: GNU make
VignetteBuilder: knitr
Depends:
    R (>= 4.4.0)
LazyData: true
biocViews:
    GenomeWideAssociation,
    Epistasis,
    Genetics,
    SNP,
    LinearMixedModel