default layout

docs/co-registration/code_example.md

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 title: Code example
 nav_order: 3
 parent: Co-registration
+layout: default
 ---
 
 

docs/co-registration/index.md

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 ---
 title: Co-registration
 nav_order: 2
+layout: default
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 # hej
 hej

docs/digitising/polhemus_digitisation.md

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 title: Polhemus digitistation
 nav_order: 1
 parent: Digtising
+layout: default
 ---
 # Polhemus digitisation
 To digtise using this module,first you need to initialise a FastrakConnector object where you specify the USB port the device is connected to. Afterwards you prepare for digitisation, which will return the fastrak to factory settings, set the output to metric, clear any incoming data and check whether the stylus and head receiver are connected properly. 

docs/index.md

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 **OPM_lab** is a free and open source software package developed to allow for co-registration between optically pumped magnetometers and a structural brain image. However, parts of the software may be useful for other purposes.
 
 The workflow contains three main parts:
-1. [Digitising sensor positions]({{ site.baseurl }}{% link digitising/index.md %})
-2. [Measuring sensor depth]({{ site.baseurl }}{% link measure_depth/index.md %})
-3. [Co-registration between MR and sensor positions]({{ site.baseurl }}{% link co-registration/index.md %})
+1. [Digitising sensor positions]({{ site.url }}{% link digitising/index.md %})
+2. [Measuring sensor depth]({{ site.url }}{% link measure_depth/index.md %})
+3. [Co-registration between MR and sensor positions]({{ site.url }}{% link co-registration/index.md %})
 
 
 ## Setup 

docs/measure_depth/code_example.md

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 title: Code example
 parent: Measuring sensor depth
 nav_order: 1
+layout: default
 ---

docs/measure_depth/index.md

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 ---
 title: Measuring sensor depth
 nav_order: 4
+layout: default
 ---
 
 # Measuring sensor depth