From ac0a923c7e671b577331258a1a0ecc7fdd46785b Mon Sep 17 00:00:00 2001 From: milkschen Date: Fri, 18 Sep 2020 16:48:07 -0400 Subject: [PATCH] supported downloading randflow_ld_26 as a non-default option --- src/download_prebuilt_indexes.sh | 5 +++-- 1 file changed, 3 insertions(+), 2 deletions(-) diff --git a/src/download_prebuilt_indexes.sh b/src/download_prebuilt_indexes.sh index 6de0170..1f08c03 100644 --- a/src/download_prebuilt_indexes.sh +++ b/src/download_prebuilt_indexes.sh @@ -1,2 +1,3 @@ -wget -P resources/ ftp://ftp.ccb.jhu.edu/pub/data/bowtie2_indexes/grch38_1kg_5spop.tar.gz -tar -zxvf resources/grch38_1kg_5spop.tar.gz --directory snakemake/ +METHOD="${1:-randflow_ld}" +wget -P resources/ https://genome-idx.s3.amazonaws.com/bt/flow/${METHOD}.tar.gz +tar -zxvf resources/randflow_ld.tar.gz --directory snakemake/