Merge branch 'dev'

langmead-lab · Sep 18, 2020 · 4a93f48 · 4a93f48
2 parents 0730117 + ac0a923
commit 4a93f48
Showing 1 changed file with 3 additions and 2 deletions.
diff --git a/src/download_prebuilt_indexes.sh b/src/download_prebuilt_indexes.sh
@@ -1,2 +1,3 @@
-wget -P resources/ ftp://ftp.ccb.jhu.edu/pub/data/bowtie2_indexes/grch38_1kg_5spop.tar.gz
-tar -zxvf resources/grch38_1kg_5spop.tar.gz --directory snakemake/
+METHOD="${1:-randflow_ld}"
+wget -P resources/ https://genome-idx.s3.amazonaws.com/bt/flow/${METHOD}.tar.gz
+tar -zxvf resources/randflow_ld.tar.gz --directory snakemake/