v0.6.1 - Network Stability and False Positives

v0.6.1

Notes

This is a minor bugfix release aimed towards resolving network connectivity errors and catching false positives.

sc2rf

• Issue #195: Consider alleles outside of parental regions as intermissions (conflicts) to catch false positives.
• Issue #201: Make LAPIS query of covSPECTRUM optional, to help with users with network connectivity issues. This can be set with the flag lapis: false in builds under the rule sc2rf_recombinants.
• Issue #202: Document connection errors related to LAPIS and provide options for solutions.

Commits

• 83ee0139 docs: update changelog for v0.6.1
• 00fe2fc8 docs: update notes for v0.6.1
• fa03ea96 workflow: fix bug where rbd_levels log was incorrectly named
• a281b75c workflow: make lapis optional param for #201 #202
• 75684b55 docs: update docs
• 1085ce0e script: postprocess count alleles outside regions as intermissions for #195
• c11770c1 param: add XAV to auto-pass for #104 #195