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20 Open 97 Closed
20 Open 97 Closed
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Issues list

Invariant sites not included in no_sites bug Something isn't working help wanted Extra attention is needed todo This issue will be addressed in a future update
#124 opened Jan 24, 2025 by gfwalker
3
Issues with Chromosome Specification in VCF File using --chromosomes bug Something isn't working
#122 opened Dec 5, 2024 by xxxicyixxx
1
Questions About Fst, Dxy, and Genome-wide π Calculations help wanted Extra attention is needed
#121 opened Nov 26, 2024 by xxxicyixxx
1
Code crashes when chromosome ID's are digit-only bug Something isn't working todo This issue will be addressed in a future update
#120 opened Oct 31, 2024 by jmoellmann
1
Should sites with no depth coverage by included or excluded from VCF files while using Whole genome data for Dxy calculation? help wanted Extra attention is needed
#119 opened Oct 25, 2024 by vincianem
1
avg_pi was bigger than that of vcftools help wanted Extra attention is needed
#118 opened Sep 9, 2024 by feiyu007
1
About --chromosomes option todo This issue will be addressed in a future update
#116 opened Aug 22, 2024 by ChenJuiYANG
1
All avg_dxy in pixy_dxy.txt is NA help wanted Extra attention is needed
#114 opened Jul 19, 2024 by ala98412
5
Calculate Missing data per window enhancement New feature or request
#109 opened Jun 13, 2024 by burbrink
File corrupted help wanted Extra attention is needed todo This issue will be addressed in a future update
#108 opened May 18, 2024 by WeixuanPlant
1
invariant vcf with ALT "*" instead of "." help wanted Extra attention is needed
#105 opened Apr 19, 2024 by macurqcron
5
0 count of count_diffs and count_comparisons and all in count_missing help wanted Extra attention is needed
#104 opened Apr 17, 2024 by hrluo93
11
issues about multiple alleles and phasing sites help wanted Extra attention is needed
#102 opened Apr 7, 2024 by zy66-su
Are these filter out sites not used in the calculation? help wanted Extra attention is needed
#101 opened Mar 28, 2024 by jiangzy26
1
pixy doesnt handle masked haplotype data? bug Something isn't working
#99 opened Mar 4, 2024 by jamesfifer
Add support for arbitrary ploidy level (at least warn about incompatibility with polyploids) enhancement New feature or request high priority todo This issue will be addressed in a future update
#97 opened Jan 24, 2024 by taprs
1
Provide convenient sample data in a package, such as sample data CHrX in sample scripts enhancement New feature or request todo This issue will be addressed in a future update
#85 opened Aug 17, 2023 by tongtongy666
ability to handle sex chromosomes enhancement New feature or request high priority todo This issue will be addressed in a future update
#79 opened May 10, 2023 by jtweir
2
Output Fst variance components enhancement New feature or request todo This issue will be addressed in a future update
#54 opened Jan 11, 2022 by SethMusker
Tajima's D enhancement New feature or request todo This issue will be addressed in a future update
#38 opened Jun 18, 2021 by valgartner
4
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