This repository contains scripts cited in the preprint (https://doi.org/10.1101/2020.07.10.190785) titled
"Intraspecies diversity reveals a subset of highly variable plant immune receptors and predicts their binding sites"
that were used for the phylogenetic and Shannon entropy analyses of NLR proteins in Arabidopsis and Brachypodium.
All data for the scripts including clade alignments and trees is available at https://doi.org/10.5281/zenodo.3951781