Version 1.1.1

Correct some minor issues:

• Correct pairs files:
  • Correct position index (previously 0-based but should be 1-based).
  • Change pairs entry to have an upper triangle shape.
• Correct recursive bin issue in the contig data file were unbinned contigs or binned contigs in bins smaller than the size threshold given were given an id of an existing bin.
• Correct issue in the contact map were contigs needed to be size sorted if a size threshold were given.
  Add some multiple network files in the output if multiple input samples were given.