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Docker or Singularity image

Masaru Koido edited this page Nov 5, 2021 · 1 revision

You can use Docker/Singularity image instead of creating the environment by conda.

Even though you use the image, you have to download external resources on your own.

Docker

version="v1.0.0"
# interactive mode
docker run -it --name mentr_it mkoido/mentr:${version}
# After analysis,
# docker rm mentr_it

This image is created using Dockerfile and deposited to Docker Hub.

Singularity

version="v1.0.0"
singularity pull MENTR.${version}.sif docker//mkoido/mentr:${version}
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