New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Jump to bottom

post-process LDSC results sc-linker #23

Open

happyhamm opened this issue Jan 31, 2023 · 0 comments

happyhamm commented Jan 31, 2023 •

edited

Loading

Hi @kkdey -
How do we reproduce the post-processed trait results with tau-star and enrichment values per trait per gene program for sc-linker as shown in the link below?
https://alkesgroup.broadinstitute.org/LDSCORE/Jagadeesh_Dey_sclinker/sclinker_results/

How would you recommend calculating the p-values if we are looking to test only 1 or 2 traits for a given scRNAseq dataset?

Thank you!

happyhamm closed this as completed

happyhamm reopened this

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment