diff --git a/revdep/Outputs/check_CollocInfer_stderr.txt b/revdep/Outputs/check_CollocInfer_stderr.txt
index e5c90c78..906b2800 100644
--- a/revdep/Outputs/check_CollocInfer_stderr.txt
+++ b/revdep/Outputs/check_CollocInfer_stderr.txt
@@ -1,6 +1,6 @@
 
 See
-  '/userdata/kingaa/projects/Rpkg/pomp/revdep/CollocInfer.Rcheck/00check.log'
+  '/home/kingaa/projects/Rpkg/pomp/revdep/CollocInfer.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_CollocInfer_stdout.txt b/revdep/Outputs/check_CollocInfer_stdout.txt
index ec7a4fbb..c3b468e6 100644
--- a/revdep/Outputs/check_CollocInfer_stdout.txt
+++ b/revdep/Outputs/check_CollocInfer_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/CollocInfer.Rcheck'
+* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/CollocInfer.Rcheck'
 * using R version 4.3.2 (2023-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * R was compiled by
@@ -18,7 +18,7 @@
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
 * checking serialization versions ... OK
-* checking whether package 'CollocInfer' can be installed ... [31s/20s] OK
+* checking whether package 'CollocInfer' can be installed ... [16s/17s] OK
 * checking installed package size ... OK
 * checking package directory ... OK
 * checking for future file timestamps ... OK
@@ -40,7 +40,7 @@
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [67s/23s] NOTE
+* checking R code for possible problems ... [36s/31s] NOTE
 Profile.GausNewt: local variable ‘dcdp’ assigned but may not be used
 Profile.GausNewt: local variable ‘gradnorm0’ assigned but may not be
   used
@@ -83,9 +83,9 @@ Variables with usage in documentation object 'FhNest' but not in code:
 * checking examples ... OK
 Examples with CPU (user + system) or elapsed time > 5s
            user system elapsed
-Profile  16.405 62.189   1.563
-FitMatch  1.632  4.969   0.164
-smooth    1.260  4.628   0.105
+Profile   2.867 10.974   1.401
+FitMatch  6.497  6.088   1.252
+ParsMatch 6.370  4.570   1.106
 * checking PDF version of manual ... OK
 * checking HTML version of manual ... OK
 * checking for non-standard things in the check directory ... OK
diff --git a/revdep/Outputs/check_DTAT_stderr.txt b/revdep/Outputs/check_DTAT_stderr.txt
index 06d64323..e91f8e13 100644
--- a/revdep/Outputs/check_DTAT_stderr.txt
+++ b/revdep/Outputs/check_DTAT_stderr.txt
@@ -1,6 +1,6 @@
 
 See
-  '/userdata/kingaa/projects/Rpkg/pomp/revdep/DTAT.Rcheck/00check.log'
+  '/home/kingaa/projects/Rpkg/pomp/revdep/DTAT.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_DTAT_stdout.txt b/revdep/Outputs/check_DTAT_stdout.txt
index 69b6dfce..501be30d 100644
--- a/revdep/Outputs/check_DTAT_stdout.txt
+++ b/revdep/Outputs/check_DTAT_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/DTAT.Rcheck'
+* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/DTAT.Rcheck'
 * using R version 4.3.2 (2023-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * R was compiled by
@@ -19,7 +19,7 @@
 * checking for hidden files and directories ... OK
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
-* checking whether package 'DTAT' can be installed ... [33s/14s] OK
+* checking whether package 'DTAT' can be installed ... [15s/15s] OK
 * checking installed package size ... OK
 * checking package directory ... OK
 * checking for future file timestamps ... OK
@@ -42,7 +42,7 @@
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [60s/15s] NOTE
+* checking R code for possible problems ... [24s/18s] NOTE
 dose.survfit: local variable ‘S’ assigned but may not be used
 as_d3_data,DE : rel_dose: local variable ‘where_na’ assigned but may
   not be used
@@ -63,13 +63,10 @@ initialize,DE: local variable ‘Q1’ assigned but may not be used
 * checking installed files from 'inst/doc' ... OK
 * checking files in 'vignettes' ... OK
 * checking examples ... OK
-Examples with CPU (user + system) or elapsed time > 5s
-               user system elapsed
-Onoue.Friberg 2.597  7.085   2.138
 ** found \donttest examples: check also with --run-donttest
 * checking for unstated dependencies in vignettes ... OK
 * checking package vignettes in 'inst/doc' ... OK
-* checking re-building of vignette outputs ... [53s/32s] OK
+* checking re-building of vignette outputs ... [29s/27s] OK
 * checking PDF version of manual ... OK
 * checking HTML version of manual ... OK
 * checking for non-standard things in the check directory ... OK
diff --git a/revdep/Outputs/check_circumstance_stderr.txt b/revdep/Outputs/check_circumstance_stderr.txt
index 1ee859b2..75592276 100644
--- a/revdep/Outputs/check_circumstance_stderr.txt
+++ b/revdep/Outputs/check_circumstance_stderr.txt
@@ -1,10 +1,10 @@
-  Running ‘mif2.R’
+  Running ‘mif2.R’ [11s/13s]
   Comparing ‘mif2.Rout’ to ‘mif2.Rout.save’ ... OK
   Running ‘pfilter.R’
   Comparing ‘pfilter.Rout’ to ‘pfilter.Rout.save’ ... OK
   Running ‘plot_matrix.R’
   Comparing ‘plot_matrix.Rout’ to ‘plot_matrix.Rout.save’ ... OK
-  Running ‘pmcmc.R’ [13s/11s]
+  Running ‘pmcmc.R’ [13s/15s]
   Comparing ‘pmcmc.Rout’ to ‘pmcmc.Rout.save’ ... OK
 
 
diff --git a/revdep/Outputs/check_circumstance_stdout.txt b/revdep/Outputs/check_circumstance_stdout.txt
index 1bbcbec1..058d66a6 100644
--- a/revdep/Outputs/check_circumstance_stdout.txt
+++ b/revdep/Outputs/check_circumstance_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/circumstance.Rcheck'
+* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/circumstance.Rcheck'
 * using R version 4.3.2 (2023-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * R was compiled by
@@ -55,11 +55,11 @@
 * checking examples ... OK
 Examples with CPU (user + system) or elapsed time > 5s
          user system elapsed
-pfilter 5.781  0.372   5.103
+pfilter 7.026  0.158   6.821
 ** found \donttest examples: check also with --run-donttest
 * checking for unstated dependencies in 'tests' ... OK
 * checking tests ...
- [46s/27s] OK
+ [34s/36s] OK
 * checking PDF version of manual ... OK
 * checking HTML version of manual ... OK
 * checking for non-standard things in the check directory ... OK
diff --git a/revdep/Outputs/check_epimdr2_stderr.txt b/revdep/Outputs/check_epimdr2_stderr.txt
index 34c457c1..d40e12fc 100644
--- a/revdep/Outputs/check_epimdr2_stderr.txt
+++ b/revdep/Outputs/check_epimdr2_stderr.txt
@@ -1,6 +1,6 @@
 
 See
-  '/userdata/kingaa/projects/Rpkg/pomp/revdep/epimdr2.Rcheck/00check.log'
+  '/home/kingaa/projects/Rpkg/pomp/revdep/epimdr2.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_epimdr2_stdout.txt b/revdep/Outputs/check_epimdr2_stdout.txt
index 02f728d2..169107a4 100644
--- a/revdep/Outputs/check_epimdr2_stdout.txt
+++ b/revdep/Outputs/check_epimdr2_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/epimdr2.Rcheck'
+* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/epimdr2.Rcheck'
 * using R version 4.3.2 (2023-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * R was compiled by
@@ -18,7 +18,7 @@
 * checking for hidden files and directories ... OK
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
-* checking whether package 'epimdr2' can be installed ... [31s/18s] OK
+* checking whether package 'epimdr2' can be installed ... [15s/15s] OK
 * checking installed package size ... OK
 * checking package directory ... OK
 * checking for future file timestamps ... OK
@@ -40,7 +40,7 @@
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [51s/12s] NOTE
+* checking R code for possible problems ... [22s/17s] NOTE
 coyne: local variable ‘H1’ assigned but may not be used
 coyne: local variable ‘H2’ assigned but may not be used
 coyne: local variable ‘I’ assigned but may not be used
@@ -152,7 +152,7 @@ twostrain: local variable ‘res’ assigned but may not be used
 * checking data for non-ASCII characters ... OK
 * checking LazyData ... OK
 * checking data for ASCII and uncompressed saves ... OK
-* checking examples ... [23s/13s] OK
+* checking examples ... [15s/13s] OK
 ** found \donttest examples: check also with --run-donttest
 * checking PDF version of manual ... OK
 * checking HTML version of manual ... OK
diff --git a/revdep/Outputs/check_epimdr_stderr.txt b/revdep/Outputs/check_epimdr_stderr.txt
index c3f29421..5b2bdb87 100644
--- a/revdep/Outputs/check_epimdr_stderr.txt
+++ b/revdep/Outputs/check_epimdr_stderr.txt
@@ -1,6 +1,6 @@
 
 See
-  '/userdata/kingaa/projects/Rpkg/pomp/revdep/epimdr.Rcheck/00check.log'
+  '/home/kingaa/projects/Rpkg/pomp/revdep/epimdr.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_epimdr_stdout.txt b/revdep/Outputs/check_epimdr_stdout.txt
index 950a8a79..4d631c88 100644
--- a/revdep/Outputs/check_epimdr_stdout.txt
+++ b/revdep/Outputs/check_epimdr_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/epimdr.Rcheck'
+* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/epimdr.Rcheck'
 * using R version 4.3.2 (2023-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * R was compiled by
@@ -19,7 +19,7 @@
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
 * checking serialization versions ... OK
-* checking whether package 'epimdr' can be installed ... [26s/12s] OK
+* checking whether package 'epimdr' can be installed ... OK
 * checking installed package size ... OK
 * checking package directory ... OK
 * checking for future file timestamps ... OK
@@ -41,7 +41,7 @@
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... NOTE
+* checking R code for possible problems ... [19s/13s] NOTE
 chainSIR: local variable ‘I’ assigned but may not be used
 chainSIR: local variable ‘R’ assigned but may not be used
 chainSIR: local variable ‘S’ assigned but may not be used
diff --git a/revdep/Outputs/check_hte_stderr.txt b/revdep/Outputs/check_hte_stderr.txt
index 46da4f6c..aab110d8 100644
--- a/revdep/Outputs/check_hte_stderr.txt
+++ b/revdep/Outputs/check_hte_stderr.txt
@@ -1,12 +1,16 @@
-  Running ‘fakery.R’ [19s/15s]
-  Comparing ‘fakery.Rout’ to ‘fakery.Rout.save’ ...  Running ‘filter.R’
-  Comparing ‘filter.Rout’ to ‘filter.Rout.save’ ...  Running ‘indep.R’
-  Comparing ‘indep.Rout’ to ‘indep.Rout.save’ ...  Running ‘stobfun.R’
+  Running ‘fakery.R’ [17s/19s]
+  Comparing ‘fakery.Rout’ to ‘fakery.Rout.save’ ... OK
+  Running ‘filter.R’
+  Comparing ‘filter.Rout’ to ‘filter.Rout.save’ ... OK
+  Running ‘indep.R’
+  Comparing ‘indep.Rout’ to ‘indep.Rout.save’ ... OK
+  Running ‘stobfun.R’
   Comparing ‘stobfun.Rout’ to ‘stobfun.Rout.save’ ... OK
-  Running ‘transmiss.R’ [26s/23s]
-  Comparing ‘transmiss.Rout’ to ‘transmiss.Rout.save’ ...
+  Running ‘transmiss.R’ [25s/24s]
+  Comparing ‘transmiss.Rout’ to ‘transmiss.Rout.save’ ... OK
+
 See
-  '/userdata/kingaa/projects/Rpkg/pomp/revdep/hte.Rcheck/00check.log'
+  '/home/kingaa/projects/Rpkg/pomp/revdep/hte.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_hte_stdout.txt b/revdep/Outputs/check_hte_stdout.txt
index d6bea206..8be83665 100644
--- a/revdep/Outputs/check_hte_stdout.txt
+++ b/revdep/Outputs/check_hte_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/hte.Rcheck'
+* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/hte.Rcheck'
 * using R version 4.3.2 (2023-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * R was compiled by
@@ -9,7 +9,7 @@
 * using option '--as-cran'
 * checking for file 'hte/DESCRIPTION' ... OK
 * checking extension type ... Package
-* this is package 'hte' version '0.0.14.0'
+* this is package 'hte' version '0.0.15.0'
 * package encoding: UTF-8
 * checking package namespace information ... OK
 * checking package dependencies ... OK
@@ -43,7 +43,7 @@
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... NOTE
+* checking R code for possible problems ... [18s/11s] NOTE
 filterfun : fun: local variable ‘theta’ assigned but may not be used
 stobfun : ofun: local variable ‘theta’ assigned but may not be used
 * checking Rd files ... OK
@@ -64,62 +64,15 @@ stobfun : ofun: local variable ‘theta’ assigned but may not be used
 * checking compilation flags used ... OK
 * checking compiled code ... OK
 * checking installed files from 'inst/doc' ... OK
-* checking examples ... [277s/36s] OK
+* checking examples ... [94s/49s] OK
 Examples with CPU (user + system) or elapsed time > 5s
-            user  system elapsed
-fake_data 34.086 104.419  12.761
-simuldat  30.314  94.112  11.228
+                   user system elapsed
+fake_data        20.187 23.818  17.923
+simuldat         16.936 18.546  15.764
+bernoulli_filter  4.686  0.117   5.816
 * checking for unstated dependencies in 'tests' ... OK
 * checking tests ...
-5,9c5,9
-< ✔ dplyr     1.1.4     ✔ readr     2.1.4
-< ✔ forcats   1.0.0     ✔ stringr   1.5.1
-< ✔ ggplot2   3.4.4     ✔ tibble    3.2.1
-< ✔ lubridate 1.9.3     ✔ tidyr     1.3.0
-< ✔ purrr     1.0.2     
----
-> ✔ dplyr     1.1.2     ✔ readr     2.1.4
-> ✔ forcats   1.0.0     ✔ stringr   1.5.0
-> ✔ ggplot2   3.4.2     ✔ tibble    3.2.1
-> ✔ lubridate 1.9.2     ✔ tidyr     1.3.0
-> ✔ purrr     1.0.1     
-5,9c5,9
-< ✔ dplyr     1.1.4     ✔ readr     2.1.4
-< ✔ forcats   1.0.0     ✔ stringr   1.5.1
-< ✔ ggplot2   3.4.4     ✔ tibble    3.2.1
-< ✔ lubridate 1.9.3     ✔ tidyr     1.3.0
-< ✔ purrr     1.0.2     
----
-> ✔ dplyr     1.1.2     ✔ readr     2.1.4
-> ✔ forcats   1.0.0     ✔ stringr   1.5.0
-> ✔ ggplot2   3.4.2     ✔ tibble    3.2.1
-> ✔ lubridate 1.9.2     ✔ tidyr     1.3.0
-> ✔ purrr     1.0.1     
-5,9c5,9
-< ✔ dplyr     1.1.4     ✔ readr     2.1.4
-< ✔ forcats   1.0.0     ✔ stringr   1.5.1
-< ✔ ggplot2   3.4.4     ✔ tibble    3.2.1
-< ✔ lubridate 1.9.3     ✔ tidyr     1.3.0
-< ✔ purrr     1.0.2     
----
-> ✔ dplyr     1.1.2     ✔ readr     2.1.4
-> ✔ forcats   1.0.0     ✔ stringr   1.5.0
-> ✔ ggplot2   3.4.2     ✔ tibble    3.2.1
-> ✔ lubridate 1.9.2     ✔ tidyr     1.3.0
-> ✔ purrr     1.0.1     
-5,9c5,9
-< ✔ dplyr     1.1.4     ✔ readr     2.1.4
-< ✔ forcats   1.0.0     ✔ stringr   1.5.1
-< ✔ ggplot2   3.4.4     ✔ tibble    3.2.1
-< ✔ lubridate 1.9.3     ✔ tidyr     1.3.0
-< ✔ purrr     1.0.2     
----
-> ✔ dplyr     1.1.2     ✔ readr     2.1.4
-> ✔ forcats   1.0.0     ✔ stringr   1.5.0
-> ✔ ggplot2   3.4.2     ✔ tibble    3.2.1
-> ✔ lubridate 1.9.2     ✔ tidyr     1.3.0
-> ✔ purrr     1.0.1     
- [74s/49s] OK
+ [57s/53s] OK
 * checking PDF version of manual ... OK
 * checking HTML version of manual ... OK
 * checking for non-standard things in the check directory ... OK
diff --git a/revdep/Outputs/check_panelPomp_stderr.txt b/revdep/Outputs/check_panelPomp_stderr.txt
index 80f44387..578bb77a 100644
--- a/revdep/Outputs/check_panelPomp_stderr.txt
+++ b/revdep/Outputs/check_panelPomp_stderr.txt
@@ -2,7 +2,7 @@
   Comparing ‘_options.Rout’ to ‘_options.Rout.save’ ... OK
   Running ‘aaa.R’
   Comparing ‘aaa.Rout’ to ‘aaa.Rout.save’ ... OK
-  Running ‘contacts.R’
+  Running ‘contacts.R’ [14s/13s]
   Comparing ‘contacts.Rout’ to ‘contacts.Rout.save’ ...  Running ‘get_col_row.R’
   Comparing ‘get_col_row.Rout’ to ‘get_col_row.Rout.save’ ... OK
   Running ‘mif2.R’
diff --git a/revdep/Outputs/check_panelPomp_stdout.txt b/revdep/Outputs/check_panelPomp_stdout.txt
index 25de89c3..00bbf0ca 100644
--- a/revdep/Outputs/check_panelPomp_stdout.txt
+++ b/revdep/Outputs/check_panelPomp_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/panelPomp.Rcheck'
+* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/panelPomp.Rcheck'
 * using R version 4.3.2 (2023-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * R was compiled by
@@ -41,7 +41,7 @@
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... OK
+* checking R code for possible problems ... [18s/11s] OK
 * checking Rd files ... OK
 * checking Rd metadata ... OK
 * checking Rd line widths ... OK
@@ -51,22 +51,7 @@
 * checking Rd \usage sections ... OK
 * checking Rd contents ... OK
 * checking for unstated dependencies in examples ... OK
-* checking examples ... [115s/14s] OK
-Examples with CPU (user + system) or elapsed time > 5s
-                         user system elapsed
-plot                    2.309  8.396   0.831
-simulate                2.324  8.378   0.797
-pfilter                 2.306  8.360   0.852
-pparams                 2.107  7.999   0.741
-panelRandomWalk         1.545  7.080   0.785
-unitlogLik              1.774  6.783   0.725
-panelGompertz           1.904  6.538   0.956
-panelPomp               1.843  6.583   0.902
-panelGompertzLikelihood 1.596  5.808   0.887
-mif2                    1.516  5.798   1.129
-unitobjects             1.426  5.828   0.765
-params                  1.107  4.944   0.740
-panelPomp_methods       1.044  4.008   1.001
+* checking examples ... [33s/16s] OK
 ** found \donttest examples: check also with --run-donttest
 * checking for unstated dependencies in 'tests' ... OK
 * checking tests ...
@@ -106,7 +91,7 @@ panelPomp_methods       1.044  4.008   1.001
 < name     [,1]     [,2]     [,3]     [,4]      [,5]
 ---
 > variable     [,1]     [,2]     [,3]     [,4]      [,5]
- [277s/45s] OK
+ [96s/54s] OK
 * checking PDF version of manual ... OK
 * checking HTML version of manual ... OK
 * checking for non-standard things in the check directory ... OK
diff --git a/revdep/Outputs/check_phylopomp_stderr.txt b/revdep/Outputs/check_phylopomp_stderr.txt
index 1dc708a0..968559a3 100644
--- a/revdep/Outputs/check_phylopomp_stderr.txt
+++ b/revdep/Outputs/check_phylopomp_stderr.txt
@@ -4,13 +4,13 @@
   Comparing ‘diagram.Rout’ to ‘diagram.Rout.save’ ... OK
   Running ‘lbdp1.R’
   Comparing ‘lbdp1.Rout’ to ‘lbdp1.Rout.save’ ... OK
-  Running ‘lbdp2.R’ [26s/20s]
+  Running ‘lbdp2.R’ [19s/19s]
   Comparing ‘lbdp2.Rout’ to ‘lbdp2.Rout.save’ ... OK
   Running ‘lbdp3.R’
   Comparing ‘lbdp3.Rout’ to ‘lbdp3.Rout.save’ ... OK
   Running ‘lineages.R’
   Comparing ‘lineages.Rout’ to ‘lineages.Rout.save’ ... OK
-  Running ‘moran1.R’ [39s/30s]
+  Running ‘moran1.R’ [41s/37s]
   Comparing ‘moran1.Rout’ to ‘moran1.Rout.save’ ... OK
   Running ‘parse.R’
   Comparing ‘parse.Rout’ to ‘parse.Rout.save’ ... OK
@@ -18,7 +18,7 @@
   Comparing ‘plot.Rout’ to ‘plot.Rout.save’ ... OK
   Running ‘seir1.R’
   Comparing ‘seir1.Rout’ to ‘seir1.Rout.save’ ... OK
-  Running ‘seir2.R’ [18s/15s]
+  Running ‘seir2.R’ [16s/14s]
   Comparing ‘seir2.Rout’ to ‘seir2.Rout.save’ ... OK
   Running ‘si2r.R’
   Comparing ‘si2r.Rout’ to ‘si2r.Rout.save’ ... OK
@@ -30,7 +30,7 @@
   Comparing ‘sir1.Rout’ to ‘sir1.Rout.save’ ... OK
 
 See
-  '/userdata/kingaa/projects/Rpkg/pomp/revdep/phylopomp.Rcheck/00check.log'
+  '/home/kingaa/projects/Rpkg/pomp/revdep/phylopomp.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_phylopomp_stdout.txt b/revdep/Outputs/check_phylopomp_stdout.txt
index 892cdf38..19cb7ae3 100644
--- a/revdep/Outputs/check_phylopomp_stdout.txt
+++ b/revdep/Outputs/check_phylopomp_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/phylopomp.Rcheck'
+* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/phylopomp.Rcheck'
 * using R version 4.3.2 (2023-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * R was compiled by
@@ -19,7 +19,7 @@
 * checking for hidden files and directories ... OK
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
-* checking whether package 'phylopomp' can be installed ... [58s/42s] OK
+* checking whether package 'phylopomp' can be installed ... [48s/57s] OK
 * used C compiler: 'gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0'
 * used C++ compiler: 'g++ (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0'
 * checking installed package size ... NOTE
@@ -47,7 +47,7 @@
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [52s/11s] OK
+* checking R code for possible problems ... [21s/13s] OK
 * checking Rd files ... OK
 * checking Rd metadata ... OK
 * checking Rd line widths ... OK
@@ -62,11 +62,11 @@
 * checking compilation flags used ... OK
 * checking compiled code ... OK
 * checking installed files from 'inst/doc' ... OK
-* checking examples ... [19s/14s] OK
+* checking examples ... [15s/16s] OK
 * checking for unstated dependencies in 'tests' ... OK
 * checking tests ...
- [202s/115s] OK
-* checking PDF version of manual ... [11s/79s] OK
+ [142s/118s] OK
+* checking PDF version of manual ... OK
 * checking HTML version of manual ... OK
 * checking for non-standard things in the check directory ... OK
 * checking for detritus in the temp directory ... OK
diff --git a/revdep/Outputs/check_pomp_stderr.txt b/revdep/Outputs/check_pomp_stderr.txt
index 3dc87fb2..158ed0c4 100644
--- a/revdep/Outputs/check_pomp_stderr.txt
+++ b/revdep/Outputs/check_pomp_stderr.txt
@@ -1,4 +1,4 @@
-  Running ‘R_v_C.R’ [24s/14s]
+  Running ‘R_v_C.R’ [19s/19s]
   Running ‘abc.R’
   Comparing ‘abc.Rout’ to ‘abc.Rout.save’ ... OK
   Running ‘baddm.R’
@@ -29,7 +29,7 @@
   Comparing ‘defunct.Rout’ to ‘defunct.Rout.save’ ... OK
   Running ‘dinit.R’
   Comparing ‘dinit.Rout’ to ‘dinit.Rout.save’ ... OK
-  Running ‘dp.R’ [157s/14s]
+  Running ‘dp.R’
   Comparing ‘dp.Rout’ to ‘dp.Rout.save’ ... OK
   Running ‘dprocess.R’
   Comparing ‘dprocess.Rout’ to ‘dprocess.Rout.save’ ... OK
@@ -41,7 +41,7 @@
   Comparing ‘eulermultinom.Rout’ to ‘eulermultinom.Rout.save’ ... OK
   Running ‘flow.R’
   Comparing ‘flow.Rout’ to ‘flow.Rout.save’ ... OK
-  Running ‘gillespie.R’ [42s/14s]
+  Running ‘gillespie.R’ [21s/13s]
   Comparing ‘gillespie.Rout’ to ‘gillespie.Rout.save’ ... OK
   Running ‘gompertz.R’
   Comparing ‘gompertz.Rout’ to ‘gompertz.Rout.save’ ... OK
diff --git a/revdep/Outputs/check_pomp_stdout.txt b/revdep/Outputs/check_pomp_stdout.txt
index 4abd6ccc..39cbef55 100644
--- a/revdep/Outputs/check_pomp_stdout.txt
+++ b/revdep/Outputs/check_pomp_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/pomp.Rcheck'
+* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/pomp.Rcheck'
 * using R version 4.3.2 (2023-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * R was compiled by
@@ -19,7 +19,7 @@
 * checking for hidden files and directories ... OK
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
-* checking whether package 'pomp' can be installed ... [38s/31s] OK
+* checking whether package 'pomp' can be installed ... [28s/34s] OK
 * used C compiler: 'gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0'
 * checking installed package size ... OK
 * checking package directory ... OK
@@ -43,7 +43,7 @@
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [55s/20s] OK
+* checking R code for possible problems ... [32s/25s] OK
 * checking Rd files ... OK
 * checking Rd metadata ... OK
 * checking Rd line widths ... OK
@@ -68,15 +68,12 @@
 * checking compilation flags used ... OK
 * checking compiled code ... OK
 * checking installed files from 'inst/doc' ... OK
-* checking examples ... [22s/10s] OK
-Examples with CPU (user + system) or elapsed time > 5s
-        user system elapsed
-ricker 2.045  7.776   0.822
+* checking examples ... [13s/11s] OK
 ** found \donttest examples: check also with --run-donttest
 * checking for unstated dependencies in 'tests' ... OK
 * checking tests ...
- [1781s/274s] OK
-* checking PDF version of manual ... [15s/11s] OK
+ [677s/208s] OK
+* checking PDF version of manual ... OK
 * checking HTML version of manual ... OK
 * checking for non-standard things in the check directory ... OK
 * checking for detritus in the temp directory ... OK
diff --git a/revdep/Outputs/check_spaero_stderr.txt b/revdep/Outputs/check_spaero_stderr.txt
index 0aa87dcf..ce247227 100644
--- a/revdep/Outputs/check_spaero_stderr.txt
+++ b/revdep/Outputs/check_spaero_stderr.txt
@@ -1,7 +1,7 @@
-  Running ‘testthat.R’
+  Running ‘testthat.R’ [15s/13s]
 
 See
-  '/userdata/kingaa/projects/Rpkg/pomp/revdep/spaero.Rcheck/00check.log'
+  '/home/kingaa/projects/Rpkg/pomp/revdep/spaero.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_spaero_stdout.txt b/revdep/Outputs/check_spaero_stdout.txt
index 8849420b..08827a5f 100644
--- a/revdep/Outputs/check_spaero_stdout.txt
+++ b/revdep/Outputs/check_spaero_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/spaero.Rcheck'
+* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/spaero.Rcheck'
 * using R version 4.3.2 (2023-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * R was compiled by
@@ -60,15 +60,12 @@ Namespace in Imports field not imported from: ‘utils’
 * checking installed files from 'inst/doc' ... OK
 * checking files in 'vignettes' ... OK
 * checking examples ... OK
-Examples with CPU (user + system) or elapsed time > 5s
-                  user system elapsed
-create_simulator 2.471  7.934    1.39
 * checking for unstated dependencies in 'tests' ... OK
 * checking tests ...
- OK
+ [15s/13s] OK
 * checking for unstated dependencies in vignettes ... OK
 * checking package vignettes in 'inst/doc' ... OK
-* checking re-building of vignette outputs ... [44s/21s] OK
+* checking re-building of vignette outputs ... [23s/23s] OK
 * checking PDF version of manual ... OK
 * checking HTML version of manual ... OK
 * checking for non-standard things in the check directory ... OK
diff --git a/revdep/Outputs/check_spatPomp_stdout.txt b/revdep/Outputs/check_spatPomp_stdout.txt
index 6aa28e24..fa78e39f 100644
--- a/revdep/Outputs/check_spatPomp_stdout.txt
+++ b/revdep/Outputs/check_spatPomp_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/spatPomp.Rcheck'
+* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/spatPomp.Rcheck'
 * using R version 4.3.2 (2023-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * R was compiled by
@@ -19,7 +19,7 @@
 * checking for hidden files and directories ... OK
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
-* checking whether package 'spatPomp' can be installed ... [40s/20s] OK
+* checking whether package 'spatPomp' can be installed ... [19s/20s] OK
 * used C compiler: 'gcc (Ubuntu 11.4.0-1ubuntu1~22.04) 11.4.0'
 * checking installed package size ... OK
 * checking package directory ... OK
@@ -42,7 +42,7 @@
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [62s/18s] OK
+* checking R code for possible problems ... [31s/25s] OK
 * checking Rd files ... OK
 * checking Rd metadata ... OK
 * checking Rd line widths ... OK
@@ -63,7 +63,7 @@
 * checking examples ... OK
 * checking for unstated dependencies in 'tests' ... OK
 * checking tests ...
- [451s/57s] OK
+ [140s/56s] OK
 * checking PDF version of manual ... OK
 * checking HTML version of manual ... OK
 * checking for non-standard things in the check directory ... OK
diff --git a/revdep/Outputs/check_stops_stderr.txt b/revdep/Outputs/check_stops_stderr.txt
index 2e654179..bcb7b966 100644
--- a/revdep/Outputs/check_stops_stderr.txt
+++ b/revdep/Outputs/check_stops_stderr.txt
@@ -1,6 +1,6 @@
 
 See
-  '/userdata/kingaa/projects/Rpkg/pomp/revdep/stops.Rcheck/00check.log'
+  '/home/kingaa/projects/Rpkg/pomp/revdep/stops.Rcheck/00check.log'
 for details.
 
 
diff --git a/revdep/Outputs/check_stops_stdout.txt b/revdep/Outputs/check_stops_stdout.txt
index 105a04f0..b633f8ab 100644
--- a/revdep/Outputs/check_stops_stdout.txt
+++ b/revdep/Outputs/check_stops_stdout.txt
@@ -1,4 +1,4 @@
-* using log directory '/userdata/kingaa/projects/Rpkg/pomp/revdep/stops.Rcheck'
+* using log directory '/home/kingaa/projects/Rpkg/pomp/revdep/stops.Rcheck'
 * using R version 4.3.2 (2023-10-31)
 * using platform: x86_64-pc-linux-gnu (64-bit)
 * R was compiled by
@@ -18,10 +18,7 @@
 * checking for hidden files and directories ... OK
 * checking for portable file names ... OK
 * checking for sufficient/correct file permissions ... OK
-* checking whether package 'stops' can be installed ... [35s/20s] WARNING
-Found the following significant warnings:
-  Warning: 'rgl.init' failed, running with 'rgl.useNULL = TRUE'.
-See '/userdata/kingaa/projects/Rpkg/pomp/revdep/stops.Rcheck/00install.out' for details.
+* checking whether package 'stops' can be installed ... [21s/24s] OK
 * checking installed package size ... OK
 * checking package directory ... OK
 * checking for future file timestamps ... OK
@@ -44,7 +41,7 @@ See '/userdata/kingaa/projects/Rpkg/pomp/revdep/stops.Rcheck/00install.out' for
 * checking S3 generic/method consistency ... OK
 * checking replacement functions ... OK
 * checking foreign function calls ... OK
-* checking R code for possible problems ... [71s/23s] NOTE
+* checking R code for possible problems ... [36s/29s] NOTE
 bcStressMin: local variable ‘lambdaorig’ assigned but may not be used
 bcStressMin: local variable ‘t’ assigned but may not be used
 c_inequality: local variable ‘out’ assigned but may not be used
@@ -92,7 +89,7 @@ tgpoptim: local variable ‘valsorig’ assigned but may not be used
 * checking data for ASCII and uncompressed saves ... OK
 * checking installed files from 'inst/doc' ... OK
 * checking files in 'vignettes' ... OK
-* checking examples ... [36s/13s] OK
+* checking examples ... [32s/12s] OK
 ** found \donttest examples: check also with --run-donttest
 * checking for unstated dependencies in vignettes ... OK
 * checking package vignettes in 'inst/doc' ... OK
@@ -102,4 +99,4 @@ tgpoptim: local variable ‘valsorig’ assigned but may not be used
 * checking for non-standard things in the check directory ... OK
 * checking for detritus in the temp directory ... OK
 * DONE
-Status: 1 WARNING, 1 NOTE
+Status: 1 NOTE
diff --git a/revdep/timings.tab b/revdep/timings.tab
index 8353bd3f..1880aeab 100644
--- a/revdep/timings.tab
+++ b/revdep/timings.tab
@@ -1,13 +1,13 @@
 "user" "system" "elapsed"
-"pomp" 590.852 1491.714 394.952
-"CollocInfer" 139.403 284.371 116.818
-"DTAT" 148.63 236.006 141.201
-"epimdr" 70.345 163.153 64.66
-"epimdr2" 98.431 182.536 93.186
-"spaero" 81.809 240.485 63.034
-"spatPomp" 211.988 532.907 151.091
-"stops" 158.436 211.838 151.275
-"circumstance" 92.849 186.086 77.426
-"hte" 194.711 405.518 140.231
-"panelPomp" 158.561 454.556 108.143
-"phylopomp" 251.465 268.861 306.509
+"pomp" 376.707 450.858 333.385
+"CollocInfer" 118.665 68.3 128.208
+"DTAT" 123.457 51.499 148.539
+"epimdr" 54.887 37.947 69.255
+"epimdr2" 79.74 38.966 100.032
+"spaero" 52.106 49.757 68.967
+"spatPomp" 143.073 125.296 161.17
+"stops" 144.626 68.837 167.464
+"circumstance" 77.226 39.054 93.443
+"hte" 146.645 89.635 162.029
+"panelPomp" 102.478 104.389 125.204
+"phylopomp" 232.404 70.339 252.819