Skip to content

Issues: khuang28jhu/bs3

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

30 Open 6 Closed
30 Open 6 Closed
Author
Filter by author
Loading
Label
Filter by label
Loading
Use alt + click/return to exclude labels
or ⇧ + click/return for logical OR
Projects
Filter by project
Loading
Milestones
Filter by milestone
Loading
Assignee
Filter by who’s assigned
Sort
Sort by
Newest Oldest Most commented Least commented Recently updated Least recently updated Best match
Most reactions
👍 👎 😄 🎉 😕 ❤️ 🚀 👀

Issues list

Reference Index fails
#39 opened Jan 27, 2024 by desmodus1984
Unable to align .fq file // Minimum RAM necessary to align reads to human genome
#38 opened May 31, 2023 by eb-97
Error index
#37 opened Sep 23, 2022 by lab23UGD
2
0.00% Aligned
#36 opened Aug 18, 2021 by nmc-ei
find multiple hit region
#34 opened Jun 19, 2020 by jeongmeani
BigAllocator: allocating too much memory
#32 opened Mar 4, 2020 by Ckhyriem
2
bs3-build error - std::bad_alloc ??
#31 opened Mar 3, 2020 by ghost
1
index problem
#30 opened Feb 27, 2020 by fanghe0720
"[Error] Cannot open input file : %s" % read_file
#29 opened Sep 24, 2019 by sunta3iouxos
1
Samtools-htslib-API: bam_index_build2() not yet implemented and no index available for pileup
#28 opened Aug 19, 2019 by Dongdong-Chen
python: can't open file 'bs_align/bs_single_end3.py': [Errno 2] No such file or directory
#27 opened Aug 14, 2019 by Dongdong-Chen
Is bs3 suitable for PBAT library?
#24 opened Jun 19, 2019 by zorrodong
TabError: inconsistent use of tabs and spaces in indentation
#23 opened Apr 11, 2019 by joseemayo
1
python3
#21 opened Mar 5, 2019 by antonkulaga
1
bs3-call_methylation gave no results
#20 opened Jan 31, 2019 by k1197445
2
Plz optimize details such as directories
#19 opened Dec 8, 2018 by PhrenoVermouth
Add SAM/BAM input as alternative to fastq
#18 opened Nov 19, 2018 by okartal
Error in Sam file
#17 opened Oct 23, 2018 by demis001
Memory issue
#16 opened Oct 19, 2018 by demis001
1
SNAP version
#15 opened Oct 5, 2018 by ktang
1
Can not find the index file in "./reference_genome/Sscrofa11.fa_snap/W_G2A and W_C2T"
#13 opened Sep 20, 2018 by xiaoxiaolongyuan
4
bs3 killed and no output
#12 opened Sep 18, 2018 by AdrianS85
1
bs_align error
#11 opened Aug 22, 2018 by lyd0527
Empty sam file
#10 opened Jul 24, 2018 by mrb20045
11
Large FASTQ's in-core, can exhaust large system RAM
#9 opened Jul 20, 2018 by dakami
1
ProTip! Type g i on any issue or pull request to go back to the issue listing page.