Comparing different alignments and DGE identifying Methods
| dataset | Alignment method | DEG identifying method | Who is working on this problem | # of DE genes |
|---|---|---|---|---|
| Maize/Bee | Star | DESeq2 | Maryam and Ambi | |
| Maize/Bee | Hisat2 | DESeq2 | Rick and Alex | |
| Maize/Bee | gsnap | DESeq2 | Jennifer and Kathy | |
| Maize/Bee | gsnap | EdgeR | Severin | |
| Maize/Bee | Star | EdgeR | Sathesh and Katie | |
| Maize/Bee | Hisat2 | EdgeR | Ryan and Siva | |
| Maize/Bee | Hisat2 | Stringtie/Ballgown | Siva and Jennifer | |
| Maize/Bee | Kallisto | EdgeR | Severin/Kyle | |
| Maize/Bee | Salmon | EdgeR | Jennifer/Kyle |