Written summary of methods performed in this repo. This is the methods write up for the paper.
| dataset | Alignment method | DEG identifying method | Who is working on this problem |
|---|---|---|---|
| Maize/Bee | Star | DESeq2 | Maryam and Ambi |
| Maize/Bee | Hisat2 | DESeq2 | Rick and Alex |
| Maize/Bee | gsnap | DESeq2 | Jennifer and Kathy |
| Maize/Bee | gsnap | EdgeR | Severin |
| Maize/Bee | Star | EdgeR | Sathesh and Katie |
| Maize/Bee | Hisat2 | EdgeR | Ryan and Siva |
| Maize/Bee | Hisat2 | Stringtie/Ballgown | Siva and Jennifer |
| Maize/Bee | Kallisto | EdgeR | Severin/Kyle |
| Maize/Bee | Salmon | EdgeR | Jennifer/Kyle |