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Merge remote-tracking branch 'origin/master'
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kcleal committed Jun 16, 2023
2 parents f4d5d13 + a39c69b commit db26570
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Expand Up @@ -44,11 +44,11 @@ Alignment of pattern and text strings can be performed by accessing WFA2-lib fun
.. code-block:: text
>>> 3M1X4M1D7M1I9M1X6M ALIGNMENT
1X1D1I1X ALIGNMENT.COMPACT
PATTERN TCTTTACTCGCGCGTT-GGAGAAATACAATAGT
||| |||| ||||||| ||||||||| ||||||
TEXT TCTATACT-GCGCGTTTGGAGAAATAAAATAGT
>>> ALIGNMENT 3M1X4M1D7M1I9M1X6M
ALIGNMENT.COMPACT 1X1D1I1X
PATTERN TCTTTACTCGCGCGTT-GGAGAAATACAATAGT
||| |||| ||||||| ||||||||| ||||||
TEXT TCTATACT-GCGCGTTTGGAGAAATAAAATAGT
The output of cigar_pretty_print can be directed to a file, rather than stdout using:

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