This code accompanies the paper 'Attenuated chromatin compartmentalization in meiosis and its maturation in sperm development' by Alavattam et al., Nat Struct Mol Biol, 2019.
- klib.py: library
- calc_scale_coeff.py: calculate Hi-C power law coefficient in a given range using maximum likelihood
- average_tads.py: plot average TAD profile
- see_loops.py: visualize point interactions on Hi-C map
- average_trans.py: plot average trans interaction map
- gc_strength.py: calculate genomic compartment strength
- mixing.py: interaction map mixing and genomic compartment strength evaluation