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Fedora (deprecated).md

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0. Development Tools

sudo dnf groupinstall "Development Tools"

sudo dnf install gcc-gfortran

1. Install Intel oneAPI Base + HPC kits (works well on AMD CPUs too, not just Intel's)

2. Install dependencies

sudo dnf install cmake

sudo dnf install libmicrohttpd-devel

sudo dnf install libwebsockets-devel

sudo dnf install openssl-devel

sudo dnf install glib2-devel

sudo dnf install cfitsio-devel

sudo dnf install lz4-devel

sudo dnf install zlib-devel

sudo dnf install bzip2-devel

sudo dnf install zfp-devel

sudo dnf install sqlite-devel

sudo dnf install zeromq-devel czmq-devel

sudo dnf install libpq-devel

sudo dnf install ispc # (not needed yet)

sudo dnf install zlib-devel

sudo dnf install libcpuid-devel	(macos: brew install libcpuid)

Intel Clear Linux (building from source):

wget https://github.com/anrieff/libcpuid/releases/download/v0.5.1/libcpuid-0.5.1.tar.gz

tar zxvf libcpuid-0.5.1.tar.gz

cd libcpuid-0.5.1

./configure

make

sudo make install

3. zfp Fortran bindings

# this step is not needed anymore
# FITSWEBQLSE contains its own version of ZFP
# that has been modified to avoid type clashes with cfitsio

on macOS

git clone https://github.com/LLNL/zfp.git

cd zfp

mkdir -p build

cd build

cmake -DZFP_WITH_OPENMP=OFF ..

make

sudo make install


# not needed right now (ZFP is only called from C at present)

git clone https://github.com/LLNL/zfp.git

* cmake:
	mkdir -p build
	cd build
	cmake -DBUILD_ZFORP=ON ..
	make

* gmake:
	gmake BUILD_ZFORP=1 FC=ifort

The library path is different in each of the above cases.

4. FPzip

git clone https://github.com/LLNL/fpzip.git

cd fpzip

mkdir -p build

cd build

cmake ..

make

sudo make install

5. JSON-FORTRAN

# the library does not work (segmentation faults) !? (works in Linux)

on macOS with homebrew:

brew install json-fortran

# Linux: manually using ifort

source /opt/intel/oneapi/setvars.sh

git clone https://github.com/jacobwilliams/json-fortran

cd json-fortran/

mkdir -p build && cd build/

cmake -DCMAKE_Fortran_COMPILER=ifort -DUSE_GNU_INSTALL_CONVENTION=TRUE ..

make

make install

6. FORTRAN-UNIX

$ git clone https://github.com/interkosmos/fortran-unix
$ cd fortran-unix/
$ make

7. FZMQ (ØMQ bindings)

pre-requisites: latex, pandoc

git clone https://github.com/richsnyder/fzmq.git

cd fzmq

mkdir build && cd build

cmake ..

make

sudo make install

8. OpenCoarrays

pre-requisites: gcc, gfortran

wget https://github.com/sourceryinstitute/OpenCoarrays/releases/download/2.9.2/OpenCoarrays-2.9.2.tar.gz

tar xvzf OpenCoarrays-2.9.2.tar.gz

cd OpenCoarrays-2.9.2

./install.sh --prefix-root /usr/local --num-threads 16 --yes-to-all

Add

source /usr/local/opencoarrays/2.9.2/setup.sh

to $PATH in .bashrc

Append

/usr/local/opencoarrays/2.9.2/lib64

to $LD_LIBRARY_PATH in .bashrc

9. Adjust environment variables

Add

export PKG_CONFIG_PATH=/usr/local/lib/pkgconfig:/usr/local/lib64/pkgconfig export LD_LIBRARY_PATH=/usr/local/lib:/usr/local/lib64:$LD_LIBRARY_PATH

set an unlimited stack size

ulimit -s unlimited

to .bashrc and re-login

10. wget http://jvo.nao.ac.jp/~chris/splatalogue_v3.db

11. Examples running using one MPI host:

mpiexec -silent-abort -n 1 ./fitswebqlse

mpiexec --hostfile ~/mpi_machines -n 4 ./fitswebqlse

mpiexec -silent-abort -machinefile /home/chris/mpi_machines -rr -n 4 ./fitswebqlse