Merge pull request #46 from js51/update_hyperoctahedral_group

Add eigenvector method for partial traces
js51 · May 29, 2024 · 9188b1f · 9188b1f
2 parents 00ae782 + 8fe48b9
commit 9188b1f
Show file tree

Hide file tree

Showing 47 changed files with 3,385 additions and 2,326 deletions.
diff --git a/.gitattributes b/.gitattributes
@@ -0,0 +1 @@
+pickles/*.pickle filter=lfs diff=lfs merge=lfs -text
diff --git a/MANIFEST.in b/MANIFEST.in
@@ -4,3 +4,4 @@ include *.txt
 include LICENSE
 include VERSION
 include *.py
+include *.pickle
diff --git a/VERSION b/VERSION
@@ -1 +1 @@
-0.3.6
+0.4.0
diff --git a/cgt/__init__.py b/cgt/__init__.py
@@ -14,5 +14,8 @@
     gap._Expect__command = gap._Expect__command.replace(gap._Expect__command[s:e], f'-b -o {gigs}G')
 from .examples import *
 from .enums import *
-from .position_paradigm import PositionParadigmFramework
-from .models import Model
+from .constants import *
+from .position_paradigm import GenomeFramework, PositionParadigmFramework, Framework
+from .models import Model
+from . import distances
+from . import plotting
diff --git a/cgt/constants.py b/cgt/constants.py
@@ -0,0 +1,5 @@
+"""
+Declare constants for the CGT package.
+"""
+
+VALUES_OF_N_WITH_SAVED_IRREPS_OF_Z = [ 7, 8, 9 ]
Original file line number	Diff line number	Diff line change
		@@ -0,0 +1 @@
		pickles/*.pickle filter=lfs diff=lfs merge=lfs -text