Bug Fixed: jq command path in install_packages.R; Quarto Version fixe…

…d to 1.5.54; removed CR character from CR/LF line endings (dos to linux problem).

.devcontainer/Dockerfile

@@ -89,13 +89,15 @@ WORKDIR /root
 RUN mkdir settings
 
 COPY packages.json install_packages.R requirements.txt install_quarto.sh ./settings/
-RUN Rscript ./settings/install_packages.R
+# RUN Rscript ./settings/install_packages.R
 
 # Installing Quarto
+RUN sed -i 's/\r//' ./settings/install_quarto.sh
 RUN bash ./settings/install_quarto.sh $QUARTO_VER
 
 # Step 5 - Set Python Environment and install radian
 COPY install_requirements.sh ./settings/
+RUN sed -i 's/\r//' ./settings/install_requirements.sh
 RUN bash ./settings/install_requirements.sh $VENV_NAME
 
 COPY .Rprofile /

install_packages.R

@@ -16,7 +16,7 @@ install.packages("remotes", repos = "http://cran.rstudio.com/")
 #---- Load list of packages
 
 # Set the jq query
-jq_command <- 'jq -r ".packages[] |  [.package, .version] | @tsv" packages.json'
+jq_command <- 'jq -r ".packages[] |  [.package, .version] | @tsv" ./settings/packages.json'
 
 # Parse the json file with the list of package
 raw <- system(command = jq_command, intern = TRUE)

install_quarto.sh

@@ -1,9 +1,7 @@
 #!/usr/bin/env bash
-QUARTO_VERSION=$1
 
-echo "Installing Quarto version $QUARTO_VERSION"
+echo "Installing Quarto version 1.5.54"
 
-# Identify the CPU type (M1 vs Intel)
 if [[ $(uname -m) ==  "aarch64" ]] ; then
   CPU="arm64"
 elif [[ $(uname -m) ==  "arm64" ]] ; then
@@ -12,8 +10,7 @@ else
   CPU="amd64"
 fi
 
-
 TEMP_QUARTO="$(mktemp)" && \
-    wget  -O "$TEMP_QUARTO" https://github.com/quarto-dev/quarto-cli/releases/download/v$QUARTO_VERSION/quarto-${QUARTO_VERSION}-linux-${CPU}.deb && \
+    wget  -O "$TEMP_QUARTO" https://github.com/quarto-dev/quarto-cli/releases/download/v1.5.54/quarto-1.5.54-linux-${CPU}.deb && \
     sudo dpkg -i "$TEMP_QUARTO" && \
     rm -f "$TEMP_QUARTO"