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CLI & converting selected features by specifying the line for each #49

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merged 7 commits into from
Feb 24, 2023
Merged

CLI & converting selected features by specifying the line for each #49

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7b696dd
adds CLI skeleton
johentsch Feb 23, 2023
638cd80
adds import and corrects positional argument
johentsch Feb 23, 2023
3321020
streamlines CLI arguments and suggests defaults
johentsch Feb 23, 2023
c0c7e70
work in progress: CLI + line layout
pythouille Feb 23, 2023
22b787c
end-of-day commit after collab session LC & JH
pythouille Feb 23, 2023
8129db4
refines commandline interface with docstrings and better argument tre…
johentsch Feb 24, 2023
f4310fe
this version converts raw labels, independent of the given line argum…
johentsch Feb 24, 2023
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2 changes: 1 addition & 1 deletion src/ms3/cli.py
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Original file line number Diff line number Diff line change
Expand Up @@ -458,7 +458,7 @@ def get_arg_parser():
# reusable argument sets
parse_args = argparse.ArgumentParser(add_help=False)
parse_args.add_argument('-d', '--dir', metavar='DIR', default=os.getcwd(), type=check_dir,
help='Folder(s) that will be scanned for input files. Defaults to current working directory if no individual files are passed via -f.')
help='Folder(s) that will be scanned for input files. Defaults to current working directory.')
parse_args.add_argument('-o', '--out', metavar='OUT_DIR', type=check_and_create,
help='Output directory.')
parse_args.add_argument('-n', '--nonrecursive', action='store_true',
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