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injlohmeier/atlasBREX (press backspace or delete to remove)

Hi, I wanted to try atlasBREX to skull stripped Dog brains on MacOs Catalina, although I have very quickly an error message. I have fsl v6.0.1 and ANTs installed. I use in terminal: bash atlasBREX.sh ...
  • Alex-mri
  • 1
  • Opened 
    on Dec 15, 2020
  • #4

Hi, I am using atlasBREX with FSL version 6.0.3, Bash version 5.0.13, on Mac OS Catalina. I also have ANTs installed. First, I cannot open most of the images available in the atlasBREX-master folder (for ...
  • costanzasimoncini
  • 4
  • Opened 
    on Oct 2, 2020
  • #3

When using the ANTs pipeline, the number of threads is set to an arbitrary value of 32. It should be possible to let the user define it, with a sane default based. The following snippet checks if the variable ...
  • lamyj
  • 1
  • Opened 
    on Mar 16, 2020
  • #2

Hi, Could you provide script for making b_marmoset infant template? Do you use Ants to do it? Thanks
  • John1231983
  • 3
  • Opened 
    on Jun 28, 2019
  • #1
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