fix coverage (#23)

.github/workflows/tests.yaml

@@ -46,7 +46,7 @@ jobs:
             - name: Useful info
               run: pip freeze
             - name: Run tests
-              run: pytest --cov src --cov-report xml
+              run: pytest --cov --cov-report xml
             - name: Upload coverage reports to Codecov
               uses: codecov/codecov-action@v3
               # only upload coverage reports for the first python version

pyproject.toml

@@ -96,6 +96,16 @@ exclude_also = [
     "if __name__ == '__main__':",
 ]
 
+# allow for coverage to find relevant files in both src/ and */site-packages
+# so that we can install the package both normally and in editable mode, and 
+# still get coverage for both cases using `pytest --cov`
+[tool.coverage.paths]
+source = ["src", "*/site-packages"]
+
+[tool.coverage.run]
+branch = true
+source = ["graph_pes"]
+
 [tool.pytest.ini_options]
 # ignore all warnings coming from the pytorch_lightning package
 filterwarnings = [