v1.1.1

Features

• Added an option to skip parameter validation for unexpected parameters using --schema_ignore_params. Multiple values can be supplied using comma as the delimiter

v1.1.0

EPI2ME Comptability

• changed --outdir to --out_dir
• updated pipeline manifest to include Github link and pipeline description

Features

• Added option to run multiple sequence alignment on consensus sequences via --run_msa
• Added option to run remote blastn search on consensus sequences via --run_blast
• Added filtering options to quality filter raw reads and consensus sequences via --max_N/--min_rl/--max_rl/--min_rq
• Added Slurm and Singularity profiles
• Memory-intensive processes are set to retry when encountering OOM errors

v1.0

• First release