v1.3

• Added --species option to search against marker genes of non-Salmonella species
• Fixed heatmap clustering error due to NA values
• Large images in reports are scrollable instead of truncated

v1.2

• Updated pipeline usage documentation
• Fixed Drug Class Summary Heatmap legend

v1.1

Use RGI for AMR annotation
Use MOB-Suite for plasmid annotation
New QC and Annotation report design to support greater user interactivity
Added CRISPR typing in genome annotation workflow
Removed support for custom database search for genome annotation

v1.0

First release