update license.

jianhong · Jul 25, 2024 · b5f4f2a · b5f4f2a
1 parent 9c38abc
commit b5f4f2a
Show file tree

Hide file tree

Showing 5 changed files with 16 additions and 41 deletions.
diff --git a/.github/workflows/basic_checks.yaml b/.github/workflows/basic_checks.yaml
@@ -12,32 +12,35 @@ jobs:
     env:
       R_REMOTES_NO_ERRORS_FROM_WARNINGS: true
       GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+      CRAN: https://packagemanager.posit.co/cran/__linux__/jammy/latest
+
     steps:
-      - uses: actions/checkout@v2
+      - uses: actions/checkout@v4
 
       - name: Query dependencies and update old packages
         run: |
-          BiocManager::install(ask=FALSE)
+          install.packages('remotes')
+          dir.create(".github")
           saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2)
         shell: Rscript {0}
 
       - name: Cache R packages
         if: runner.os != 'Windows'
-        uses: actions/cache@v1
+        uses: actions/cache@v4
         with:
           path: /usr/local/lib/R/site-library
           key: ${{ env.cache-version }}-${{ runner.os }}-r-${{ hashFiles('.github/depends.Rds') }}
           restore-keys: ${{ env.cache-version }}-${{ runner.os }}-r-
 
       # This lets us augment with additional dependencies
-      - name: Install system dependencies
-        if: runner.os == 'Linux'
-        env:
-          RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
-        run: |
-          Rscript -e "remotes::install_github('r-hub/sysreqs')"
-          sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
-          sudo -s eval "$sysreqs"
+      # - name: Install system dependencies
+      #   if: runner.os == 'Linux'
+      #   env:
+      #     RHUB_PLATFORM: linux-x86_64-ubuntu-gcc
+      #   run: |
+      #     Rscript -e "remotes::install_github('r-hub/sysreqs')"
+      #     sysreqs=$(Rscript -e "cat(sysreqs::sysreq_commands('DESCRIPTION'))")
+      #     sudo -s eval "$sysreqs"
 
       - name: Install dependencies
         run: |

diff --git a/.github/workflows/push_docker.yaml b/.github/workflows/push_docker.yaml
diff --git a/DESCRIPTION b/DESCRIPTION
@@ -1,4 +1,4 @@
-Package: basicBioinformaticsDRC2023
+Package: basicBioinformaticsDRC2024
 Type: Package
 Version: 1.0.6
 Title: DRC2024 basic bioinformatics

diff --git a/LICENSE b/LICENSE
@@ -1,2 +1,2 @@
-YEAR: 2023
+YEAR: 2024
 COPYRIGHT HOLDER: Jianhong Ou
diff --git a/inst/images/dockerhub_result.png b/inst/images/dockerhub_result.png