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Issues list

inconsistent scores for running on forward/reverse complement with non-uniform background probabilities
#49 opened Nov 25, 2024 by st--
How to install this moudle on Windows?
#48 opened Aug 8, 2024 by MrLiBowen
Remove -march=native from MOODS/python /setup.py?
#47 opened Jul 4, 2023 by zia1138
4
TypeError specifically when using --best-hits
#46 opened Mar 11, 2023 by plger
moods-dna.py: Segmentation fault (core dumped) for long motifs
#45 opened Jan 24, 2023 by osyafinkelberg
2
mood-score threshold choice for a given p-value and PWM is different across chromosomes enhancement
#44 opened Jan 8, 2023 by osyafinkelberg
4
How could I add threads in moods-dna.py ?
#42 opened Oct 17, 2022 by jiangpuxuan
No parse matrix with first order PWM with scoring
#41 opened Sep 22, 2022 by cmandier
counts_max_hits function in Scanner class unavailable in MOODS 1.9.4.1 enhancement
#40 opened Aug 2, 2022 by rogadde
@jhkorhonen
1
document difference between threshold_from_p_with_precision vs threshold_from_p
#38 opened Apr 12, 2022 by alexlenail
3
MOODS.search() deprecated? 1.9.4.1 locally installed via pip for python3.7 question
#35 opened Sep 28, 2021 by kandabarau
1
Windows installation
#33 opened Feb 9, 2021 by denklewer
1
Hit index in the reverse complement direction question
#29 opened Jan 14, 2020 by gencouchchu
2
motif mapping not correct? bug
#26 opened Apr 25, 2019 by YichaoOU
@jhkorhonen
6
How to we specify indels? Advertised functions do not exist? enhancement
#25 opened Apr 23, 2019 by YichaoOU
@jhkorhonen
2
MOODS coredumps when motif file does not exist bug
#23 opened Nov 8, 2018 by ghuls
@jhkorhonen
Does MOODS take into account multiple testing correction? enhancement question
#22 opened Oct 23, 2018 by doczmp
2
P-value as score enhancement
#18 opened Sep 25, 2017 by iamjli
@jhkorhonen
1
Different log_odds output between MOODS and Biopython enhancement
#15 opened May 24, 2017 by fabio-t
@jhkorhonen
3
Multiprocessing on moods_dna.py question
#13 opened Feb 8, 2017 by vmesel
3
Match Scores question
#12 opened Feb 3, 2017 by imk1
9
ProTip! no:milestone will show everything without a milestone.