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version number -> 1.9.4
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jhkorhonen committed May 9, 2019
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2 changes: 1 addition & 1 deletion python/readme.MD
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MOODS-python 1.9.3
MOODS-python 1.9.4
==================

Motif Occurrence Detection Suite
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3 changes: 1 addition & 2 deletions python/setup.py
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common_includes = ["core/"]
common_compile_args = ['-march=native', '-O3', '-fPIC', '--std=c++11']


tools_mod = Extension('MOODS._tools',
sources=['core/tools_wrap.cxx',
'core/moods_tools.cpp',
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)

setup (name = 'MOODS-python',
version = '1.9.3',
version = '1.9.4',
description = 'MOODS: Motif Occurrence Detection Suite',
maintainer = "Janne H. Korhonen",
maintainer_email = "janne.h.korhonen@gmail.com",
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18 changes: 13 additions & 5 deletions readme.MD
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MOODS 1.9.3
MOODS 1.9.4
===========

MOODS is a suite of algorithms for matching position weight matrices (PWM) against DNA sequences, featuring advanced matrix matching algorithms implemented in C++ that can be used to scan hundreds of matrices against chromosome-sized sequences in few seconds. MOODS has been designed with integration into large-scale python workflows in mind, but can also be used as a stand-alone analysis tool.

* MOODS 1.9.3 released:
* pip support!
* support for adjusting the precision of p-value computation
* bugfixes for variant matching code
* MOODS 1.9.3 released:
* fixed bug in background distribution estimation with non-ACGT characters
* updated install script for better support of newer macOS releases
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Download
--------

Download the packages here:
Install via pip:

* Pip install instructions here

Or download the package:

* Python 2.7: [MOODS-python-1.9.3.tar.gz](https://github.com/jhkorhonen/MOODS/releases/download/v1.9.3/MOODS-python-1.9.3.tar.gz)
* Python 2.7: [MOODS-python-1.9.4.tar.gz](https://github.com/jhkorhonen/MOODS/releases/download/v1.9.4/MOODS-python-1.9.4.tar.gz)

Currently only the Python package is available; it contains MOODS Python libraries along a commandline interface for most of the MOODS functions.

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For bug reports and other software issues, you can use [issue tracker](https://github.com/jhkorhonen/MOODS/issues). Or contact us directly:

* [Janne H. Korhonen](https://users.aalto.fi/~korhonj2/) MOODS developer


* Add pip contact
Licensing
---------

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