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update readmes
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jhkorhonen committed May 14, 2019
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4 changes: 2 additions & 2 deletions python/readme.MD
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Expand Up @@ -13,11 +13,11 @@ The quickest way to install MOODS is using pip:

(a) Install the module to your local Python library path:

pip install --user moods-python
pip install --user MOODS-python

(b) Install the module for all users:

pip install moods-python
pip install MOODS-python

Installing the MOODS package from PyPi installs the `moods-dna.py` script to
your Python executable directory. Test it by running:
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16 changes: 7 additions & 9 deletions readme.MD
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Expand Up @@ -4,7 +4,7 @@ MOODS 1.9.4
MOODS is a suite of algorithms for matching position weight matrices (PWM) against DNA sequences, featuring advanced matrix matching algorithms implemented in C++ that can be used to scan hundreds of matrices against chromosome-sized sequences in few seconds. MOODS has been designed with integration into large-scale python workflows in mind, but can also be used as a stand-alone analysis tool.

* MOODS 1.9.4 released:
* pip support!
* PyPi package (https://pypi.org/project/MOODS-python/), courtesy of [Fabio Ticconi](https://github.com/fabio-t)
* support for adjusting the precision of p-value computation
* bugfixes for variant matching code
* MOODS 1.9.3 released:
Expand All @@ -23,13 +23,13 @@ The current release is the 1.9 series of MOODS, an intermediate release towards
Download
--------

Install via pip:

* Pip install instructions here

Or download the package:
Download the package:

* Python 2.7: [MOODS-python-1.9.4.tar.gz](https://github.com/jhkorhonen/MOODS/releases/download/v1.9.4/MOODS-python-1.9.4.tar.gz)

Or install from [PyPi](https://pypi.org/project/MOODS-python/) using pip:

* `pip install --user MOODS-python`

Currently only the Python package is available; it contains MOODS Python libraries along a commandline interface for most of the MOODS functions.

Expand All @@ -46,10 +46,8 @@ See the GitHub wiki for documentation:
Contact
-------

For bug reports and other software issues, you can use [issue tracker](https://github.com/jhkorhonen/MOODS/issues). Or contact us directly:

* For bug reports and other software issues, preferably use [issue tracker](https://github.com/jhkorhonen/MOODS/issues).
* [Janne H. Korhonen](https://users.aalto.fi/~korhonj2/) MOODS developer
* Add pip contact

Licensing
---------
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