From 71cc0e2be78bfd32e0f1f3eebae98e2d2d32254e Mon Sep 17 00:00:00 2001 From: "Janne H. Korhonen" Date: Mon, 2 May 2016 19:45:33 +0000 Subject: [PATCH 1/3] Updated readme --- readme.MD | 12 +++++++++++- 1 file changed, 11 insertions(+), 1 deletion(-) diff --git a/readme.MD b/readme.MD index 658e163..09601cc 100644 --- a/readme.MD +++ b/readme.MD @@ -3,6 +3,8 @@ MOODS 1.9.1 MOODS is a suite of algorithms for matching position weight matrices (PWM) against DNA sequences, featuring advanced matrix matching algorithms implemented in C++ that can be used to scan hundreds of matrices against chromosome-sized sequences in few seconds. MOODS has been designed with integration into large-scale python workflows in mind, but can also be used as a stand-alone analysis tool. + * MOODS 1.9.1.1 released: + * fixed installation script * MOODS 1.9.1 released: * introduced python commandline tool for basic analysis * bugfixes in p-value and scanner code @@ -15,7 +17,7 @@ Download Download the packages here: -* Python 2.7: [MOODS-python-1.9.1.tar.gz](https://github.com/jhkorhonen/MOODS/releases/download/v1.9.1/MOODS-python-1.9.1.tar.gz) +* Python 2.7: [MOODS-python-1.9.1.1.tar.gz](https://github.com/jhkorhonen/MOODS/releases/download/v1.9.1.1/MOODS-python-1.9.1.1.tar.gz) Currently only the Python package is available; it contains MOODS Python libraries along a commandline interface for most of the MOODS functions. @@ -29,6 +31,14 @@ See the GitHub wiki for documentation: * [Getting started](https://github.com/jhkorhonen/MOODS/wiki/Getting-started) +Contact +------- + +For bug reports and other software issues, you can use [issue tracker](https://github.com/jhkorhonen/MOODS/issues). + + * [Janne H. Korhonen](http://www.ru.is/kennarar/korhonen/) MOODS developer + + Licensing --------- From a6d10b755e18a6c96b82962d1497cfb5687a4b61 Mon Sep 17 00:00:00 2001 From: "Janne H. Korhonen" Date: Mon, 2 May 2016 19:51:33 +0000 Subject: [PATCH 2/3] Bumped version number --- python/setup.py | 2 +- readme.MD | 8 ++++---- 2 files changed, 5 insertions(+), 5 deletions(-) diff --git a/python/setup.py b/python/setup.py index 42fe5b5..2a65352 100755 --- a/python/setup.py +++ b/python/setup.py @@ -41,7 +41,7 @@ ) setup (name = 'MOODS-python', - version = '1.9.1', + version = '1.9.2', description = 'MOODS: Motif Occurrence Detection Suite', maintainer = "Janne H. Korhonen", maintainer_email = "janne.h.korhonen@gmail.com", diff --git a/readme.MD b/readme.MD index 09601cc..d060655 100644 --- a/readme.MD +++ b/readme.MD @@ -1,9 +1,9 @@ -MOODS 1.9.1 +MOODS 1.9.2 =========== MOODS is a suite of algorithms for matching position weight matrices (PWM) against DNA sequences, featuring advanced matrix matching algorithms implemented in C++ that can be used to scan hundreds of matrices against chromosome-sized sequences in few seconds. MOODS has been designed with integration into large-scale python workflows in mind, but can also be used as a stand-alone analysis tool. - * MOODS 1.9.1.1 released: + * MOODS 1.9.2 released: * fixed installation script * MOODS 1.9.1 released: * introduced python commandline tool for basic analysis @@ -17,7 +17,7 @@ Download Download the packages here: -* Python 2.7: [MOODS-python-1.9.1.1.tar.gz](https://github.com/jhkorhonen/MOODS/releases/download/v1.9.1.1/MOODS-python-1.9.1.1.tar.gz) +* Python 2.7: [MOODS-python-1.9.2.tar.gz](https://github.com/jhkorhonen/MOODS/releases/download/v1.9.2/MOODS-python-1.9.2.tar.gz) Currently only the Python package is available; it contains MOODS Python libraries along a commandline interface for most of the MOODS functions. @@ -34,7 +34,7 @@ See the GitHub wiki for documentation: Contact ------- -For bug reports and other software issues, you can use [issue tracker](https://github.com/jhkorhonen/MOODS/issues). +For bug reports and other software issues, you can use [issue tracker](https://github.com/jhkorhonen/MOODS/issues). Or contact us directly: * [Janne H. Korhonen](http://www.ru.is/kennarar/korhonen/) MOODS developer From 9764dd5114d142638b98b7dd234f743aea467021 Mon Sep 17 00:00:00 2001 From: "Janne H. Korhonen" Date: Mon, 2 May 2016 19:58:05 +0000 Subject: [PATCH 3/3] Bumped more version numbers --- python/readme.MD | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/python/readme.MD b/python/readme.MD index 0b6efba..5b96435 100644 --- a/python/readme.MD +++ b/python/readme.MD @@ -1,4 +1,4 @@ -MOODS-python 1.9.1 +MOODS-python 1.9.2 ================== Motif Occurrence Detection Suite