qccollect.log

[INFO] 2018/10/26 13:58:42 Qccollect -  qccollect.pl [options] -si [sample_info.yaml] -r [regexp.yaml] -o [outfile]
   -si/--sample_info_file        Sample info file (YAML format, Supply whole path, mandatory)
   -r/--regexp_file              Regular expression file (YAML format, Supply whole path, mandatory)
   -o/--outfile                  Data file output (Supply whole path, defaults to "qcmetrics.yaml")
   -preg/--print_regexp          Print the regexp used at CMMS switch (defaults to "0" (=no))
   -prego/--print_regexp_outfile Regexp YAML outfile (defaults to "qc_regexp.yaml")
   -ske/--skip_evaluation        Skip evaluation step (boolean)
   -epg/--evaluate_plink_gender  Evaluate plink gender (boolean)
   -l/--log_file                 Log file (Default: "qccollect.log")
   -h/--help                     Display this help message
   -v/--version                  Display version
[FATAL] 2018/10/26 13:58:42 Qccollect - Must supply a '-sample_info_file' (supply whole path)