clear all outputs, work with google colab

jeffmcm1977 · Jul 17, 2024 · e2a3e1e · e2a3e1e
1 parent 6bbbde1
commit e2a3e1e
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Showing 12 changed files with 501 additions and 1,906 deletions.
diff --git a/CMB_ACT_Likelihood.ipynb b/CMB_ACT_Likelihood.ipynb
diff --git a/CMB_School_Part_03.ipynb b/CMB_School_Part_03.ipynb
@@ -1,5 +1,12 @@
 {
  "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "<a href=\"https://colab.research.google.com/github/jeffmcm1977/CMBAnalysis_SummerSchool/blob/master/CMB_School_Part_03.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -15,6 +22,18 @@
     "We will now add noise and filter the map - so that we have a map with all astrophysical and instrumental effects."
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "!python -c \"import cmb_modules\" || ( \\\n",
+    "    wget https://github.com/jeffmcm1977/CMBAnalysis_SummerSchool/raw/master/cmb_school.tar.gz && \\\n",
+    "    tar xzvf cmb_school.tar.gz \\\n",
+    ")"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -29,11 +48,9 @@
     "import matplotlib.pyplot as plt\n",
     "import astropy.io.fits as fits\n",
     "\n",
-    "#%cd /Users/reneehlozek/Dropbox/ACTSummerSchool  ## put your directory where the maps and libraries live here\n",
-    "%matplotlib inline\n",
     "import constants as cs # the constants module\n",
-    "\n",
     "import cmb_modules # the module of functions\n",
+    "\n",
     "N = int(cs.N)\n",
     "c_min = cs.c_min\n",
     "c_max = cs.c_max\n",

diff --git a/CMB_School_Part_04.ipynb b/CMB_School_Part_04.ipynb
diff --git a/CMB_School_Part_05.ipynb b/CMB_School_Part_05.ipynb
diff --git a/CMB_School_Part_06.ipynb b/CMB_School_Part_06.ipynb
@@ -1,5 +1,12 @@
 {
  "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "<a href=\"https://colab.research.google.com/github/jeffmcm1977/CMBAnalysis_SummerSchool/blob/master/CMB_School_Part_06.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -18,6 +25,18 @@
     "In this self study exercise, we are now going to use some public data from the ACT collaboration, compute power spectra and compare them to theory power spectra."
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "!python -c \"import cmb_modules\" || ( \\\n",
+    "    wget https://github.com/jeffmcm1977/CMBAnalysis_SummerSchool/raw/master/cmb_school.tar.gz && \\\n",
+    "    tar xzvf cmb_school.tar.gz \\\n",
+    ")"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,
@@ -31,9 +50,8 @@
     "import matplotlib.mlab as mlab\n",
     "import matplotlib.pyplot as plt\n",
     "import astropy.io.fits as fits\n",
-    "%matplotlib inline\n",
-    "import constants as cs # the constants module\n",
     "\n",
+    "import constants as cs # the constants module\n",
     "import cmb_modules # the module of functions\n",
     "\n",
     "N = cs.N\n",

diff --git a/CMB_School_Part_07.ipynb b/CMB_School_Part_07.ipynb
diff --git a/CMB_School_Part_08.ipynb b/CMB_School_Part_08.ipynb
@@ -1,5 +1,12 @@
 {
  "cells": [
+  {
+   "cell_type": "markdown",
+   "metadata": {},
+   "source": [
+    "<a href=\"https://colab.research.google.com/github/jeffmcm1977/CMBAnalysis_SummerSchool/blob/master/CMB_School_Part_08.ipynb\" target=\"_parent\"><img src=\"https://colab.research.google.com/assets/colab-badge.svg\" alt=\"Open In Colab\"/></a>"
+   ]
+  },
   {
    "cell_type": "markdown",
    "metadata": {},
@@ -23,19 +30,28 @@
     "We will start by pulling CAMB python so that we can get it running. Get pycamb from https://pypi.python.org/pypi/camb/0.1.1."
    ]
   },
+  {
+   "cell_type": "code",
+   "execution_count": null,
+   "metadata": {},
+   "outputs": [],
+   "source": [
+    "!python -c \"import cmb_modules\" || ( \\\n",
+    "    wget https://github.com/jeffmcm1977/CMBAnalysis_SummerSchool/raw/master/cmb_school.tar.gz && \\\n",
+    "    tar xzvf cmb_school.tar.gz \\\n",
+    ")\n",
+    "!python -c \"import camb\" || pip install camb"
+   ]
+  },
   {
    "cell_type": "code",
    "execution_count": null,
    "metadata": {},
    "outputs": [],
    "source": [
     "# Import CAMB\n",
-    "%matplotlib inline\n",
-    "import sys, platform, os\n",
     "from matplotlib import pyplot as plt\n",
     "import numpy as np\n",
-    "print('Using CAMB installed at '+ os.path.realpath(os.path.join(os.getcwd(),'..')))\n",
-    "sys.path.insert(0,os.path.realpath(os.path.join(os.getcwd(),'..')))\n",
     "import camb\n",
     "from camb import model, initialpower"
    ]
@@ -183,7 +199,10 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "collapsed": true
+    "collapsed": true,
+    "jupyter": {
+     "outputs_hidden": true
+    }
    },
    "outputs": [],
    "source": [
@@ -376,7 +395,10 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "collapsed": true
+    "collapsed": true,
+    "jupyter": {
+     "outputs_hidden": true
+    }
    },
    "outputs": [],
    "source": [
@@ -418,7 +440,10 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "collapsed": true
+    "collapsed": true,
+    "jupyter": {
+     "outputs_hidden": true
+    }
    },
    "outputs": [],
    "source": [
@@ -450,7 +475,10 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "collapsed": true
+    "collapsed": true,
+    "jupyter": {
+     "outputs_hidden": true
+    }
    },
    "outputs": [],
    "source": [
@@ -461,7 +489,10 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "collapsed": true
+    "collapsed": true,
+    "jupyter": {
+     "outputs_hidden": true
+    }
    },
    "outputs": [],
    "source": [
@@ -486,7 +517,10 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "collapsed": true
+    "collapsed": true,
+    "jupyter": {
+     "outputs_hidden": true
+    }
    },
    "outputs": [],
    "source": [
@@ -504,7 +538,10 @@
    "cell_type": "code",
    "execution_count": null,
    "metadata": {
-    "collapsed": true
+    "collapsed": true,
+    "jupyter": {
+     "outputs_hidden": true
+    }
    },
    "outputs": [],
    "source": []
@@ -513,7 +550,7 @@
  "metadata": {
   "anaconda-cloud": {},
   "kernelspec": {
-   "display_name": "Python 3",
+   "display_name": "Python 3 (ipykernel)",
    "language": "python",
    "name": "python3"
   },
@@ -527,9 +564,9 @@
    "name": "python",
    "nbconvert_exporter": "python",
    "pygments_lexer": "ipython3",
-   "version": "undefined.undefined.undefined"
+   "version": "3.12.3"
   }
  },
  "nbformat": 4,
- "nbformat_minor": 1
+ "nbformat_minor": 4
 }
diff --git a/CMB_School_Part_09.ipynb b/CMB_School_Part_09.ipynb
diff --git a/CMB_School_Part_10.ipynb b/CMB_School_Part_10.ipynb
diff --git a/CMB_School_Part_11_foregrounds_and_ILC.ipynb b/CMB_School_Part_11_foregrounds_and_ILC.ipynb
diff --git a/CMB_School_Part_12.ipynb b/CMB_School_Part_12.ipynb
diff --git a/CMB_School_Part_12_v2.ipynb b/CMB_School_Part_12_v2.ipynb