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Instructions HiC‐Bench

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javrodriguez edited this page Dec 12, 2023 · 6 revisions
  1. Download repository.

module load git

git clone https://github.com/javrodriguez/DBIND

  1. Create symlinks to input data.

cd DBIND

mkdir FILTER

cd FILTER

ln -sn ../../*rep* ./

cd ..

  1. Create sample sheet

module load r

Rscript ./make_sampleSheet_hicbench.R

  1. If there are samples for different different factors (i.e. different TFs or chromatin marks) and/or cell lines, fill the columns Factor and Tissue in the table samples.diffBind.csv accordingly.

  2. Make PCAs.

sbatch pca_diffBind.sh

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