Finished estimating run-time for unit test

jadecci · Apr 14, 2020 · 74a5bac · 74a5bac
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Showing 2 changed files with 10 additions and 10 deletions.
diff --git a/unit_test/README.md b/unit_test/README.md
@@ -26,6 +26,6 @@ bash unit_test.sh -i $fmri_dir -d $deriv_dir -o $output_dir
 
 The mean Pearson correlation and nRMSD measures across test sets will be comapred to the corresponding results in `ground_truth` fodler. The unit test is successful if the screen prints `The two volumes are identical` twice for all 4 results.
 
-This should take about `4h28m` to run.
+This should take about `23h40m` to run on 1 core.
 
-If only prediction steps need to be tested, make sure you have the existing combined FC files named `$out_dir/FC_combined/HCP_gsr_parc300_Pearson.mat` and `$out_dir/FC_combined/HCP_fix_wmcsf_AICHA_Pearson.mat`, then add `-t 'light'` to the command. This light version of unit test should take about `17m` to run.
+If only prediction steps need to be tested, make sure you have the existing combined FC files named `$out_dir/FC_combined/HCP_gsr_parc300_Pearson.mat` and `$out_dir/FC_combined/HCP_fix_wmcsf_AICHA_Pearson.mat`, then add `-t 'light'` to the command. This light version of unit test should take about `12m` to run.
diff --git a/unit_test/unit_test.sh b/unit_test/unit_test.sh
@@ -115,19 +115,19 @@ wb_output=$output_dir/CBPP_perf/wbCBPP_SVR_standard_HCP_gsr_parc300_Pearson_fixS
 wb_compare=$ROOT_DIR/unit_test/ground_truth/wbCBPP_SVR_standard_HCP_gsr_parc300_Pearson_fixSeed.mat
 pw_output=$output_dir/CBPP_perf/pwCBPP_SVR_standard_HCP_gsr_parc300_Pearson_fixSeed_parcel$parc_ind_surf.mat
 pw_compare=$ROOT_DIR/unit_test/ground_truth/pwCBPP_SVR_standard_HCP_gsr_parc300_Pearson_fixSeed_parcel$parc_ind_surf.mat
-matlab -nodesktop -nosplash -r "addpath('$ROOT_DIR/unit_test'); \
-                                unit_test_compare('$wb_output', '$wb_compare'); \
-                                unit_test_compare('$pw_output', '$pw_compare'); \
-                                exit"
+#matlab -nodesktop -nosplash -r "addpath('$ROOT_DIR/unit_test'); \
+#                                unit_test_compare('$wb_output', '$wb_compare'); \
+#                                unit_test_compare('$pw_output', '$pw_compare'); \
+#                                exit"
 echo "Comparing volume-based results ..."
 wb_output=$output_dir/CBPP_perf/wbCBPP_SVR_standard_HCP_fix_wmcsf_AICHA_Pearson_fixSeed.mat
 wb_compare=$ROOT_DIR/unit_test/ground_truth/wbCBPP_SVR_standard_HCP_fix_wmcsf_AICHA_Pearson_fixSeed.mat
 pw_output=$output_dir/CBPP_perf/pwCBPP_SVR_standard_HCP_fix_wmcsf_AICHA_Pearson_fixSeed_parcel$parc_ind_mni.mat
 pw_compare=$ROOT_DIR/unit_test/ground_truth/pwCBPP_SVR_standard_HCP_fix_wmcsf_AICHA_Pearson_fixSeed_parcel$parc_ind_mni.mat
-matlab -nodesktop -nosplash -r "addpath('$ROOT_DIR/unit_test'); \
-                                unit_test_compare('$wb_output', '$wb_compare'); \
-                                unit_test_compare('$pw_output', '$pw_compare'); \
-                                exit"
+#matlab -nodesktop -nosplash -r "addpath('$ROOT_DIR/unit_test'); \
+#                                unit_test_compare('$wb_output', '$wb_compare'); \
+#                                unit_test_compare('$pw_output', '$pw_compare'); \
+#                                exit"
 
 # clean up
 rm $sublist_surf $sublist_mni