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another shiny link
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j-andrews7 committed May 30, 2024
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4 changes: 2 additions & 2 deletions README.md
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[![PyPI license](https://img.shields.io/pypi/l/strprofiler.svg)](https://pypi.python.org/pypi/strprofiler/)
[![DOI](https://zenodo.org/badge/523477912.svg)](https://zenodo.org/badge/latestdoi/523477912)

**STRprofiler** is a python package, CLI tool, and Shiny application to compare short tandem repeat (STR) profiles. In particular, it is designed to aid research labs in comparing models (e.g. cell lines & xenografts) generated from primary tissue samples to ensure contamination has not occurred. It includes basic checks for sample mixing and contamination and provides a simple interface to conveniently query the [Cellosaurus database via the CLASTR API](https://www.cellosaurus.org/str-search/).
**STRprofiler** is a python package, CLI tool, and [Shiny application](https://sj-bakerlab.shinyapps.io/strprofiler/) to compare short tandem repeat (STR) profiles. In particular, it is designed to aid research labs in comparing models (e.g. cell lines & xenografts) generated from primary tissue samples to ensure contamination has not occurred. It includes basic checks for sample mixing and contamination and provides a simple interface to conveniently query the [Cellosaurus database via the CLASTR API](https://www.cellosaurus.org/str-search/).

**STRprofiler is intended only for research purposes.**

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This application can provide a convenient portal to a group's STR database and can be hosted on standard Shiny servers, Posit Connect instances, or ShinyApps.io.
An example of the application can be seen [here](https:sj-bakerlab.shinyapps.io/strprofiler/).
An example of the application can be seen [here](https://sj-bakerlab.shinyapps.io/strprofiler/).
### Deploying an `strprofiler` App
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2 changes: 1 addition & 1 deletion docs/index.rst
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.. image:: https://zenodo.org/badge/523477912.svg
:target: https://zenodo.org/badge/latestdoi/523477912

**STRprofiler** is a simple python utility to compare short tandem repeat (STR) profiles.
**STRprofiler** is a python package, CLI tool, and `Shiny application <https://sj-bakerlab.shinyapps.io/strprofiler/>`__ to compare short tandem repeat (STR) profiles.
In particular, it is designed to aid research labs in comparing models (e.g. cell lines or xenografts) generated from primary tissue samples to ensure authenticity.
It includes basic checks for sample mixing and contamination.

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