renamed contaminants folder

iraiosub · Jan 11, 2024 · 84f943b · 84f943b
1 parent 1d819ad
commit 84f943b
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Showing 3 changed files with 2 additions and 2 deletions.
diff --git a/...RNA_rRNA_with_full_rRNA_OSCAR_fixed.fa.gz → ...RNA_rRNA_with_full_rRNA_OSCAR_fixed.fa.gz b/...RNA_rRNA_with_full_rRNA_OSCAR_fixed.fa.gz → ...RNA_rRNA_with_full_rRNA_OSCAR_fixed.fa.gz
diff --git a/...A.gencode.v29.annotation.plus_oscar.fa.gz → ...A.gencode.v29.annotation.plus_oscar.fa.gz b/...A.gencode.v29.annotation.plus_oscar.fa.gz → ...A.gencode.v29.annotation.plus_oscar.fa.gz
diff --git a/conf/genomes.config b/conf/genomes.config
@@ -15,7 +15,7 @@ params {
             fasta = "https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_44/GRCh38.primary_assembly.genome.fa.gz"
             gtf = "https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_44/gencode.v44.primary_assembly.annotation.gtf.gz"
             star_index = null
-            contaminants_fasta = "${projectDir}/assets/small_rna/named_sn_sno_rRNA.gencode.v29.annotation.plus_oscar.fa.gz"
+            contaminants_fasta = "${projectDir}/assets/contaminants/named_sn_sno_rRNA.gencode.v29.annotation.plus_oscar.fa.gz"
             transcript_info = "${projectDir}/assets/transcript_info/gencode.v44.primary_assembly.annotation.longest_cds.transcript_info.tsv"
             transcript_fasta = "https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_human/release_44/gencode.v44.transcripts.fa.gz"
             bowtie2_index = null
@@ -26,7 +26,7 @@ params {
             fasta = "https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M33/GRCm39.primary_assembly.genome.fa.gz"
             gtf = "https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M33/gencode.vM33.primary_assembly.annotation.gtf.gz"
             star_index = null
-            contaminants_fasta = "${projectDir}/assets/small_rna/GRCm38.p6.snRNA_snoRNA_rRNA_with_full_rRNA_OSCAR_fixed.fa.gz"
+            contaminants_fasta = "${projectDir}/assets/contaminants/GRCm38.p6.snRNA_snoRNA_rRNA_with_full_rRNA_OSCAR_fixed.fa.gz"
             transcript_info = "${projectDir}/assets/transcript_info/gencode.vM33.primary_assembly.annotation.longest_cds.transcript_info.tsv"
             transcript_fasta = "https://ftp.ebi.ac.uk/pub/databases/gencode/Gencode_mouse/release_M33/gencode.vM33.transcripts.fa.gz"
             bowtie2_index = null