updated contamintants for test profiles

iraiosub · Jan 11, 2024 · 65e5584 · 65e5584
1 parent 84f943b
commit 65e5584
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Showing 2 changed files with 2 additions and 2 deletions.
diff --git a/conf/github.config b/conf/github.config
@@ -13,7 +13,7 @@ params {
     // Reference
     fasta = 'https://raw.githubusercontent.com/iraiosub/test_data/main/chr1.GRCh38.primary_assembly.genome.fa.gz'
     gtf = 'https://raw.githubusercontent.com/iraiosub/test_data/main/chr1.gencode.v29.primary_assembly.annotation.gtf.gz'
-    smallrna_fasta = "${projectDir}/assets/small_rna/named_sn_sno_rRNA.gencode.v29.annotation.plus_oscar.fa.gz"
+    contaminants_fasta = "${projectDir}/assets/contaminants/named_sn_sno_rRNA.gencode.v29.annotation.plus_oscar.fa.gz"
     star_index = null
     transcript_info = null
 

diff --git a/conf/test.config b/conf/test.config
@@ -14,7 +14,7 @@ params {
     // Reference
     fasta = 'https://github.com/iraiosub/riboseq-flow/raw/main/test_data/ref/chr20.GRCh38.primary_assembly.genome.fa.gz'
     gtf = 'https://github.com/iraiosub/riboseq-flow/raw/main/test_data/ref/chr20.gencode.v29.primary_assembly.annotation.gtf.gz'
-    smallrna_fasta = "${projectDir}/assets/small_rna/named_sn_sno_rRNA.gencode.v29.annotation.plus_oscar.fa.gz"
+    contaminants_fasta = "${projectDir}/assets/contaminants/named_sn_sno_rRNA.gencode.v29.annotation.plus_oscar.fa.gz"
     star_index = null
     transcript_info = null