vagrant-scibox

Vagrant box aimed at bootstraping the work with scientific computation packages like jupyter and julia.

Getting Started

First of all you will need to install vagrant.

Then:

cd ~
git clone https://github.com/infiRD/vagrant-scibox.git
cd vagrant-scibox
vagrant up && vagrant ssh

If you want to upgrade linux distribution in the box, run following:

UPGRADE=true vagrant up && vagrant reload && vagrant ssh

After proper startup, jupyter notebook should be available on http://localhost:8888?token=scibox.

All project files should be placed in projects directory. My projects are in separate repository.

Using Hydrogen

If you are using Hydrogen, you will need to configure hydrogen kernel gateways:

• start Atom IDE
• press Ctrl + , and go to Packages > Hydrogen > Settings
• into List of kernel gateways to use past following:

[{ "name": "Scibox", "options": {"baseUrl": "http://localhost:8888", "token": "scibox" }}]

Optional tasks

Displaying currently running notebooks:

jupyter notebook list

Based on

• Ubuntu 16.04.1 LTS (Xenial Xerus) - Linux distro
• VAGRANT - VM manager
• conda - Conda package manager
• jupyter/notebook - jupyter notebooks
• JupyterLab - JupyterLab computational environment
• julia - Julia language
• oh-my-zsh
• LS_COLORS

Versioning

We use SemVer for versioning. For the versions available, see the tags on this repository

Authors

• Martin Zamba - Initial work - infiRD

License

This project is licensed under the MIT License - see the LICENSE file for details

Contributing

Contributions to scibox are welcome. Just fork the GitHub repository and send a pull request