Version 2.2.1:

- Changed the conda environment file: removed package mkl and add a specific version to pyqt (5.9).
- Changed blast Evalue default back to 1.0

clans/__main__.py

@@ -66,7 +66,8 @@ def main():
         try:
             app = QApplication([])
             window = MainWindow()
-            window.app.run()
+            window.show()
+            sys.exit(app.exec_())
 
         except Exception as error:
             print(error)

clans/clans/GUI/main_window.py

@@ -162,7 +162,8 @@ def __init__(self):
         self.save_image_submenu.addAction(self.save_stereo_image_action)
 
         self.quit_action = QAction("Quit", self)
-        self.quit_action.triggered.connect(QApplication.quit)
+        # self.quit_action.triggered.connect(QApplication.quit)
+        self.quit_action.triggered.connect(self.close_main_window)
         self.file_menu.addAction(self.quit_action)
 
         # Create the Configuration menu
@@ -603,6 +604,10 @@ def __init__(self):
             self.load_file_worker = io.ReadInputWorker(cfg.run_params['input_format'])
             self.load_input_file()
 
+    def close_main_window(self):
+        qApp.closeAllWindows()
+        QApplication.quit()
+
     # Bring all the buttons to their default state
     def reset_window(self):
 

clans/config.py

@@ -11,7 +11,7 @@
 output_format = 'clans'
 
 # Blast-related default parameters
-BLAST_Evalue_cutoff = 0.01
+BLAST_Evalue_cutoff = 1.0
 BLAST_scoring_matrix = 'BLOSUM62'
 BLAST_threads_num = 2
 blast_batch_size = 500

clans_2_2.yml

@@ -3,8 +3,7 @@ channels:
   - conda-forge
 dependencies:
   - numba=0.53
-  - mkl
   - vispy
-  - pyqt
+  - pyqt=5.9
   - biopython
   - pillow