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pyproject.toml
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[tool.poetry]
name = "rra-population-model"
version = "0.0.1"
description = "Geospatial model of where people live."
authors = [
"James Collins <collijk@uw.edu>",
]
license = "BSD-3-Clause"
readme = "README.md"
documentation = "https://collijk.github.io/rra-population-model"
homepage = "https://collijk.github.io/rra-population-model"
repository = "https://github.com/collijk/rra-population-model"
classifiers = [
"Development Status :: 4 - Beta",
"Intended Audience :: Developers",
"Operating System :: OS Independent",
"Programming Language :: Python",
"Programming Language :: Python :: 3",
"Programming Language :: Python :: 3.10",
"Programming Language :: Python :: 3.11",
"Programming Language :: Python :: 3.12",
"Topic :: Software Development :: Libraries :: Python Modules",
"Typing :: Typed",
]
packages = [
{ include = "rra_population_model", from = "src" }
]
[tool.poetry.dependencies]
python = ">=3.10, <3.13"
click = "*"
geopandas = "^1.0.1"
numpy = "^2.2.1"
pandas = "^2.2.3"
rasterra = "^0.6.1"
shapely = "^2.0.6"
pydantic = "^2.10.4"
rra-tools = "^1.0.23"
pyyaml = "^6.0.2"
scikit-learn = "^1.6.0"
pyarrow = "^18.1.0"
torch = "^2.5.1"
lightning = "^2.5.0.post0"
scikit-image = "^0.25.1"
pypdf2 = "^3.0.1"
contextily = "^1.6.2"
[tool.poetry.group.dev.dependencies]
mkdocstrings = {version = "*", extras = ["python"]}
mkdocs-material = "*"
mkdocs-table-reader-plugin = "*"
mkdocs-gen-files = "*"
mkdocs-literate-nav = "*"
mkdocs-section-index = "*"
mypy = "*"
pre-commit = "*"
pymdown-extensions = "*"
pytest = "*"
pytest-github-actions-annotate-failures = "*"
pytest-cov = "*"
python-kacl = "*"
ruff = "*"
pandas-stubs = "^2.2.3.241126"
types-tqdm = "^4.67.0.20241221"
types-pyyaml = "^6.0.12.20241230"
[build-system]
requires = ["poetry-core>=1.0.0"]
build-backend = "poetry.core.masonry.api"
[tool.poetry.scripts]
pmrun = "rra_population_model.cli:pmrun"
pmtask = "rra_population_model.cli:pmtask"
[tool.ruff]
target-version = "py310" # The lowest supported version
[tool.ruff.lint]
# By default, enable all the lint rules.
# Add to the ignore list below if you don't want some rules.
# If you need some ignores for certain modules, see tool.ruff.lint.per-file-ignores below.
# For individual ignore cases, prefer inline `# noqa`s within the code.
select = ["ALL"]
ignore = [
"COM812", # flake8 missing trailing comma, fomatter handles
"ISC001", # Implicit string concatenation is not allowed
"ANN", # Type hints related, let mypy handle these.
"D", # Docstrings related, way too strict to our taste
"T201", # Use of `print` detected, we don't have formal logging yet.
"PD901", # Don't use generic 'df', practicality beats purity.
"PD008", # .at is okay
"PD010", # I like .unstack()
"RET504", # Assign to variable before return, useful for debugging
"FBT001", # Boolean type positional arg, annoying with cli flags
"S603", # Supbrocess arg validation, prone to false positives
"FIX002", # TODOs are okay.
"TD002", # TODOs don't need an author
"TD003", # TODOs don't need a linked issue
"PYI041", # float | int is better explicit typing than depending on a special case
"RUF007", # zip is idiomatic, this check is dumb.
"RET505", # Else after return, too many false positives.
"E501", # Line too long, handled by ruff format
"TC002", # Type-checking on 3rd party packages.
"PLR0913", # We have a long of function args a lot, and making better datastru
]
[tool.ruff.lint.per-file-ignores]
"tests/**" = [
"S101", # "Use of `assert` detected"
"ARG", # "Unused function argument". Fixtures are often unused.
"S105", # "Possible hardcoded password".
]
"scripts/**" = [
"INP001", # "Scripts are not part of a package."
]
[tool.ruff.lint.mccabe]
max-complexity = 10
[tool.ruff.lint.pep8-naming]
classmethod-decorators = [
"classmethod",
"pydantic.validator",
"pydantic.root_validator",
]
[tool.ruff.lint.flake8-tidy-imports]
ban-relative-imports = "all"
[tool.pytest.ini_options]
addopts = """\
--cov rra_population_model \
--cov tests \
--cov-report term-missing \
--no-cov-on-fail \
"""
[tool.coverage.report]
fail_under = 100
exclude_lines = [
'if TYPE_CHECKING:',
'pragma: no cover'
]
[tool.mypy]
# This is the global mypy configuration.
# Avoid changing this!
strict = true # See all the enabled flags `mypy --help | grep -A 10 'Strict mode'`
disallow_any_unimported = false
# If you need to ignore something for some specific module,
# add overrides for them. Avoid changing the global config!
# For example:
[[tool.mypy.overrides]]
module = [
"geopandas.*",
"shapely.*",
"seaborn.*",
"mpl_toolkits.*",
"rasterio.*",
"affine.*",
"scipy.*",
"sklearn.*",
"contextily.*",
]
ignore_missing_imports = true
# [[tool.mypy.overrides]]
# module = [
# "tests/my_thing/test_my_thing",
# ]
# disallow_untyped_defs = false